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Mutant Information

Mutant Name	FN-99 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-99 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12130579 C-T Homo INTERGENIC
SBS Chr1 15091889 T-C Homo INTRON
SBS Chr1 19161546 G-A Homo INTERGENIC
SBS Chr2 2079713 C-A Homo UTR_3_PRIME
SBS Chr2 22999932 T-C Homo INTERGENIC
SBS Chr3 2223713 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g032000
SBS Chr3 14377162 C-T Hetero UTR_3_PRIME
SBS Chr3 18178143 G-A Hetero INTRON
SBS Chr3 36848528 G-A Hetero INTERGENIC
SBS Chr4 623845 C-T Hetero INTERGENIC
SBS Chr4 623848 T-A Hetero INTERGENIC
SBS Chr4 2715081 T-C Hetero INTERGENIC
SBS Chr4 5416688 C-T Homo INTERGENIC
SBS Chr4 5416694 C-G Homo INTERGENIC
SBS Chr4 15607470 T-C Homo INTERGENIC
SBS Chr5 978790 A-T Hetero INTERGENIC
SBS Chr5 7033354 C-A Hetero UTR_5_PRIME
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr7 29644221 A-C Hetero INTRON
SBS Chr8 2384388 T-G Homo INTRON
SBS Chr8 14455725 C-T Homo INTERGENIC
SBS Chr9 12533325 C-T Hetero INTERGENIC
SBS Chr9 14707765 G-A Hetero INTERGENIC
SBS Chr10 18324000 G-A Hetero INTERGENIC
SBS Chr12 1378310 A-T Homo INTRON
SBS Chr12 24902519 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2681238 2681251 13 OsKitaake11g038200
Deletion Chr7 2850971 2851292 321
Deletion Chr10 3084119 3084413 294
Deletion Chr5 5375602 5375673 71
Deletion Chr7 6395297 6395298 1 OsKitaake07g074500
Deletion Chr5 10304566 10304567 1
Deletion Chr5 16756132 16756133 1
Deletion Chr6 20217424 20217434 10
Deletion Chr7 20472927 20472932 5
Deletion Chr3 21439103 21439222 119
Deletion Chr2 23205845 23205941 96
Deletion Chr5 25628419 25628536 117
Deletion Chr2 34257625 34257627 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2394521 Chr8 15252318 OsKitaake08g119000
Translocation Chr11 9635858 Chr2 5790624
Translocation Chr11 9635862 Chr2 5787117 OsKitaake02g079900
Translocation Chr3 17539407 Chr2 25288878

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12130579	C-T	Homo	INTERGENIC
SBS	Chr1	15091889	T-C	Homo	INTRON
SBS	Chr1	19161546	G-A	Homo	INTERGENIC
SBS	Chr2	2079713	C-A	Homo	UTR_3_PRIME
SBS	Chr2	22999932	T-C	Homo	INTERGENIC
SBS	Chr3	2223713	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g032000
SBS	Chr3	14377162	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	18178143	G-A	Hetero	INTRON
SBS	Chr3	36848528	G-A	Hetero	INTERGENIC
SBS	Chr4	623845	C-T	Hetero	INTERGENIC
SBS	Chr4	623848	T-A	Hetero	INTERGENIC
SBS	Chr4	2715081	T-C	Hetero	INTERGENIC
SBS	Chr4	5416688	C-T	Homo	INTERGENIC
SBS	Chr4	5416694	C-G	Homo	INTERGENIC
SBS	Chr4	15607470	T-C	Homo	INTERGENIC
SBS	Chr5	978790	A-T	Hetero	INTERGENIC
SBS	Chr5	7033354	C-A	Hetero	UTR_5_PRIME
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr7	29644221	A-C	Hetero	INTRON
SBS	Chr8	2384388	T-G	Homo	INTRON
SBS	Chr8	14455725	C-T	Homo	INTERGENIC
SBS	Chr9	12533325	C-T	Hetero	INTERGENIC
SBS	Chr9	14707765	G-A	Hetero	INTERGENIC
SBS	Chr10	18324000	G-A	Hetero	INTERGENIC
SBS	Chr12	1378310	A-T	Homo	INTRON
SBS	Chr12	24902519	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2681238	2681251	13	OsKitaake11g038200
Deletion	Chr7	2850971	2851292	321
Deletion	Chr10	3084119	3084413	294
Deletion	Chr5	5375602	5375673	71
Deletion	Chr7	6395297	6395298	1	OsKitaake07g074500
Deletion	Chr5	10304566	10304567	1
Deletion	Chr5	16756132	16756133	1
Deletion	Chr6	20217424	20217434	10
Deletion	Chr7	20472927	20472932	5
Deletion	Chr3	21439103	21439222	119
Deletion	Chr2	23205845	23205941	96
Deletion	Chr5	25628419	25628536	117
Deletion	Chr2	34257625	34257627	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2394521	Chr8	15252318	OsKitaake08g119000
Translocation	Chr11	9635858	Chr2	5790624
Translocation	Chr11	9635862	Chr2	5787117	OsKitaake02g079900
Translocation	Chr3	17539407	Chr2	25288878

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes