Search Kitaake

Mutant Information

Mutant Name	FN1043-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1043-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1960737 A-T Hetero UTR_3_PRIME
SBS Chr1 41512552 G-A Homo INTERGENIC
SBS Chr2 2121679 C-T Hetero INTERGENIC
SBS Chr2 3605524 A-G Hetero INTERGENIC
SBS Chr2 15135891 A-G Homo INTERGENIC
SBS Chr3 5015241 C-T Hetero INTERGENIC
SBS Chr3 20179677 C-T Homo INTERGENIC
SBS Chr5 709002 G-A Homo INTERGENIC
SBS Chr5 29106948 T-A Homo INTRON
SBS Chr6 20619555 C-T Homo INTERGENIC
SBS Chr7 4995803 C-T Homo INTERGENIC
SBS Chr8 15085852 T-C Homo INTERGENIC
SBS Chr9 901381 A-T Hetero INTERGENIC
SBS Chr9 4607498 C-T Homo INTERGENIC
SBS Chr9 5968996 G-A Hetero INTRON
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr10 12139973 G-A Hetero INTERGENIC
SBS Chr11 7518182 A-C Hetero INTERGENIC
SBS Chr11 10988746 G-A Hetero INTERGENIC
SBS Chr12 20974203 T-C Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 800949 800956 7 OsKitaake10g005300
Deletion Chr5 1157874 1157875 1
Deletion Chr8 4474141 4474145 4
Deletion Chr8 5797654 5797659 5
Deletion Chr6 8186498 8186501 3
Deletion Chr1 9962591 9962598 7
Deletion Chr11 10091540 10091542 2 OsKitaake11g102800
Deletion Chr5 11923914 11923917 3
Deletion Chr12 19418279 19418283 4
Deletion Chr2 23147630 23147633 3
Deletion Chr5 23268781 23268783 2
Deletion Chr11 25210096 25210097 1
Deletion Chr8 25556001 25570000 13999 4
Deletion Chr8 25790001 25811000 20999 2
Deletion Chr3 26659995 26659996 1
Deletion Chr5 29018001 29049000 30999 5
Deletion Chr2 29914151 29914152 1
Deletion Chr4 31614375 31614376 1
Deletion Chr1 34718174 34718177 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2
Insertion Chr9 17788069 17788072 2
Insertion Chr11 24049691 24049694 2
Insertion Chr12 8382711 8382714 2
Insertion Chr2 13865666 13865669 2
Insertion Chr12 11688580 11688582 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 25510115 25556686 OsKitaake08g200800
Inversion Chr8 25510131 25570644 2
Inversion Chr5 28967411 29023123 2
Inversion Chr5 28967414 29048678 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1960737	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	41512552	G-A	Homo	INTERGENIC
SBS	Chr2	2121679	C-T	Hetero	INTERGENIC
SBS	Chr2	3605524	A-G	Hetero	INTERGENIC
SBS	Chr2	15135891	A-G	Homo	INTERGENIC
SBS	Chr3	5015241	C-T	Hetero	INTERGENIC
SBS	Chr3	20179677	C-T	Homo	INTERGENIC
SBS	Chr5	709002	G-A	Homo	INTERGENIC
SBS	Chr5	29106948	T-A	Homo	INTRON
SBS	Chr6	20619555	C-T	Homo	INTERGENIC
SBS	Chr7	4995803	C-T	Homo	INTERGENIC
SBS	Chr8	15085852	T-C	Homo	INTERGENIC
SBS	Chr9	901381	A-T	Hetero	INTERGENIC
SBS	Chr9	4607498	C-T	Homo	INTERGENIC
SBS	Chr9	5968996	G-A	Hetero	INTRON
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr10	12139973	G-A	Hetero	INTERGENIC
SBS	Chr11	7518182	A-C	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Hetero	INTERGENIC
SBS	Chr12	20974203	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	800949	800956	7	OsKitaake10g005300
Deletion	Chr5	1157874	1157875	1
Deletion	Chr8	4474141	4474145	4
Deletion	Chr8	5797654	5797659	5
Deletion	Chr6	8186498	8186501	3
Deletion	Chr1	9962591	9962598	7
Deletion	Chr11	10091540	10091542	2	OsKitaake11g102800
Deletion	Chr5	11923914	11923917	3
Deletion	Chr12	19418279	19418283	4
Deletion	Chr2	23147630	23147633	3
Deletion	Chr5	23268781	23268783	2
Deletion	Chr11	25210096	25210097	1
Deletion	Chr8	25556001	25570000	13999	4
Deletion	Chr8	25790001	25811000	20999	2
Deletion	Chr3	26659995	26659996	1
Deletion	Chr5	29018001	29049000	30999	5
Deletion	Chr2	29914151	29914152	1
Deletion	Chr4	31614375	31614376	1
Deletion	Chr1	34718174	34718177	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	25510115	25556686	OsKitaake08g200800
Inversion	Chr8	25510131	25570644	2
Inversion	Chr5	28967411	29023123	2
Inversion	Chr5	28967414	29048678	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes