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Mutant Information

Mutant Name	FN1050-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1050-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20042850 C-T Hetero INTERGENIC
SBS Chr1 27972825 A-C Hetero INTERGENIC
SBS Chr1 31364379 G-A Hetero INTRON
SBS Chr3 6588150 C-T Homo INTERGENIC
SBS Chr3 17186821 C-T Homo INTERGENIC
SBS Chr3 19761936 G-A Homo INTERGENIC
SBS Chr3 26631766 T-A Hetero INTERGENIC
SBS Chr3 32315267 T-C Hetero INTERGENIC
SBS Chr3 32472737 A-T Hetero UTR_3_PRIME
SBS Chr3 32472738 A-T Hetero UTR_3_PRIME
SBS Chr3 32542449 G-A Hetero INTERGENIC
SBS Chr4 13569306 A-C Hetero UTR_5_PRIME
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr6 12076610 T-C Hetero INTERGENIC
SBS Chr6 12076616 T-G Hetero INTERGENIC
SBS Chr6 12971181 G-A Hetero INTERGENIC
SBS Chr6 23544956 C-T Homo INTERGENIC
SBS Chr6 25085403 G-A Homo INTERGENIC
SBS Chr7 302748 A-C Hetero INTERGENIC
SBS Chr7 3833312 T-C Hetero INTRON
SBS Chr7 5474996 C-T Hetero INTERGENIC
SBS Chr7 5475000 C-T Hetero INTERGENIC
SBS Chr7 28097248 G-A Hetero INTERGENIC
SBS Chr8 526615 T-C Hetero INTERGENIC
SBS Chr8 540023 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g007700
SBS Chr8 26046303 C-T Homo INTERGENIC
SBS Chr10 10868708 C-G Hetero INTERGENIC
SBS Chr11 14179428 C-A Hetero INTRON
SBS Chr11 18473562 A-C Hetero INTERGENIC
SBS Chr11 20452218 G-A Hetero INTERGENIC
SBS Chr11 22592220 A-G Hetero INTERGENIC
SBS Chr12 2268562 C-A Homo INTERGENIC
SBS Chr12 13929244 C-A Homo INTERGENIC
SBS Chr12 14779661 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2511725 2511726 1
Deletion Chr11 12122837 12122841 4
Deletion Chr5 12781131 12781132 1
Deletion Chr5 13264727 13264735 8
Deletion Chr6 14429051 14429053 2
Deletion Chr2 20155251 20155260 9
Deletion Chr3 21085001 21093000 7999
Deletion Chr10 22261948 22261952 4
Deletion Chr7 24549001 24674000 124999 11
Deletion Chr3 24728156 24728160 4
Deletion Chr6 26118432 26118438 6
Deletion Chr3 35865001 35893000 27999 10
Deletion Chr2 36333001 36636000 302999 58

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 32840416 32840418 1
Insertion Chr6 23533723 23533725 1
Insertion Chr12 20146354 20146356 1 OsKitaake12g154800

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18932727 19034611
Inversion Chr3 18937734 19033516
Inversion Chr3 20252630 21092775

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20042850	C-T	Hetero	INTERGENIC
SBS	Chr1	27972825	A-C	Hetero	INTERGENIC
SBS	Chr1	31364379	G-A	Hetero	INTRON
SBS	Chr3	6588150	C-T	Homo	INTERGENIC
SBS	Chr3	17186821	C-T	Homo	INTERGENIC
SBS	Chr3	19761936	G-A	Homo	INTERGENIC
SBS	Chr3	26631766	T-A	Hetero	INTERGENIC
SBS	Chr3	32315267	T-C	Hetero	INTERGENIC
SBS	Chr3	32472737	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	32472738	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	32542449	G-A	Hetero	INTERGENIC
SBS	Chr4	13569306	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	12076610	T-C	Hetero	INTERGENIC
SBS	Chr6	12076616	T-G	Hetero	INTERGENIC
SBS	Chr6	12971181	G-A	Hetero	INTERGENIC
SBS	Chr6	23544956	C-T	Homo	INTERGENIC
SBS	Chr6	25085403	G-A	Homo	INTERGENIC
SBS	Chr7	302748	A-C	Hetero	INTERGENIC
SBS	Chr7	3833312	T-C	Hetero	INTRON
SBS	Chr7	5474996	C-T	Hetero	INTERGENIC
SBS	Chr7	5475000	C-T	Hetero	INTERGENIC
SBS	Chr7	28097248	G-A	Hetero	INTERGENIC
SBS	Chr8	526615	T-C	Hetero	INTERGENIC
SBS	Chr8	540023	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g007700
SBS	Chr8	26046303	C-T	Homo	INTERGENIC
SBS	Chr10	10868708	C-G	Hetero	INTERGENIC
SBS	Chr11	14179428	C-A	Hetero	INTRON
SBS	Chr11	18473562	A-C	Hetero	INTERGENIC
SBS	Chr11	20452218	G-A	Hetero	INTERGENIC
SBS	Chr11	22592220	A-G	Hetero	INTERGENIC
SBS	Chr12	2268562	C-A	Homo	INTERGENIC
SBS	Chr12	13929244	C-A	Homo	INTERGENIC
SBS	Chr12	14779661	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2511725	2511726	1
Deletion	Chr11	12122837	12122841	4
Deletion	Chr5	12781131	12781132	1
Deletion	Chr5	13264727	13264735	8
Deletion	Chr6	14429051	14429053	2
Deletion	Chr2	20155251	20155260	9
Deletion	Chr3	21085001	21093000	7999
Deletion	Chr10	22261948	22261952	4
Deletion	Chr7	24549001	24674000	124999	11
Deletion	Chr3	24728156	24728160	4
Deletion	Chr6	26118432	26118438	6
Deletion	Chr3	35865001	35893000	27999	10
Deletion	Chr2	36333001	36636000	302999	58

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18932727	19034611
Inversion	Chr3	18937734	19033516
Inversion	Chr3	20252630	21092775

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes