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Mutant Information

Mutant Name	FN1060-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1060-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40664907 C-T Homo INTRON
SBS Chr2 973731 T-A Hetero INTRON
SBS Chr2 10681881 T-A Hetero INTERGENIC
SBS Chr2 32877467 G-A Homo INTERGENIC
SBS Chr2 34497399 T-A Hetero INTERGENIC
SBS Chr3 7726927 T-C Hetero INTERGENIC
SBS Chr3 7726928 T-C Hetero INTERGENIC
SBS Chr3 19187672 A-G Homo INTERGENIC
SBS Chr3 22549590 T-G Homo INTRON
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 7176425 C-A Hetero INTERGENIC
SBS Chr4 28939616 A-G Hetero INTERGENIC
SBS Chr5 707548 G-T Hetero INTERGENIC
SBS Chr5 6885808 A-G Homo INTERGENIC
SBS Chr5 8686015 C-T Hetero INTERGENIC
SBS Chr5 15564917 G-A Homo INTERGENIC
SBS Chr5 15696958 A-G Hetero INTRON
SBS Chr5 30172067 T-G Homo INTERGENIC
SBS Chr6 202829 C-T Hetero INTRON
SBS Chr6 5006793 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g067300
SBS Chr6 5006810 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 18910388 C-A Hetero INTERGENIC
SBS Chr6 18910389 G-A Hetero INTERGENIC
SBS Chr6 20078814 C-G Hetero INTERGENIC
SBS Chr6 27198518 A-T Hetero INTERGENIC
SBS Chr7 13414418 T-C Hetero INTERGENIC
SBS Chr7 17978065 G-T Hetero INTERGENIC
SBS Chr8 2137537 G-A Hetero INTERGENIC
SBS Chr8 7255174 C-G Hetero INTERGENIC
SBS Chr8 8676894 G-A Hetero INTERGENIC
SBS Chr8 11880499 C-T Hetero INTERGENIC
SBS Chr9 12057496 G-A Hetero INTERGENIC
SBS Chr9 12058504 A-T Hetero INTERGENIC
SBS Chr10 14731019 C-T Hetero INTERGENIC
SBS Chr11 11430787 T-C Hetero INTERGENIC
SBS Chr11 15412895 C-T Hetero INTERGENIC
SBS Chr11 19778207 T-A Hetero INTERGENIC
SBS Chr12 14961889 C-T Homo INTERGENIC
SBS Chr12 25069914 T-C Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 6237678 6237679 1 OsKitaake05g064200
Deletion Chr5 7422122 7422134 12
Deletion Chr12 8186932 8186934 2
Deletion Chr12 11434905 11434918 13
Deletion Chr1 17855001 17890000 34999 2
Deletion Chr1 17895001 18219000 323999 20
Deletion Chr6 22695799 22695801 2
Deletion Chr7 28847225 28847226 1 OsKitaake07g275300
Deletion Chr2 29670107 29670110 3
Deletion Chr1 39477199 39477205 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18775659 18775662 2
Insertion Chr4 34996898 34996901 2
Insertion Chr11 19457660 19457664 3
Insertion Chr12 10853863 10853868 4
Insertion Chr12 15941367 15941369 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18808113 Chr6 7751991 2
Translocation Chr9 18808591 Chr6 7751682 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40664907	C-T	Homo	INTRON
SBS	Chr2	973731	T-A	Hetero	INTRON
SBS	Chr2	10681881	T-A	Hetero	INTERGENIC
SBS	Chr2	32877467	G-A	Homo	INTERGENIC
SBS	Chr2	34497399	T-A	Hetero	INTERGENIC
SBS	Chr3	7726927	T-C	Hetero	INTERGENIC
SBS	Chr3	7726928	T-C	Hetero	INTERGENIC
SBS	Chr3	19187672	A-G	Homo	INTERGENIC
SBS	Chr3	22549590	T-G	Homo	INTRON
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	7176425	C-A	Hetero	INTERGENIC
SBS	Chr4	28939616	A-G	Hetero	INTERGENIC
SBS	Chr5	707548	G-T	Hetero	INTERGENIC
SBS	Chr5	6885808	A-G	Homo	INTERGENIC
SBS	Chr5	8686015	C-T	Hetero	INTERGENIC
SBS	Chr5	15564917	G-A	Homo	INTERGENIC
SBS	Chr5	15696958	A-G	Hetero	INTRON
SBS	Chr5	30172067	T-G	Homo	INTERGENIC
SBS	Chr6	202829	C-T	Hetero	INTRON
SBS	Chr6	5006793	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g067300
SBS	Chr6	5006810	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	18910388	C-A	Hetero	INTERGENIC
SBS	Chr6	18910389	G-A	Hetero	INTERGENIC
SBS	Chr6	20078814	C-G	Hetero	INTERGENIC
SBS	Chr6	27198518	A-T	Hetero	INTERGENIC
SBS	Chr7	13414418	T-C	Hetero	INTERGENIC
SBS	Chr7	17978065	G-T	Hetero	INTERGENIC
SBS	Chr8	2137537	G-A	Hetero	INTERGENIC
SBS	Chr8	7255174	C-G	Hetero	INTERGENIC
SBS	Chr8	8676894	G-A	Hetero	INTERGENIC
SBS	Chr8	11880499	C-T	Hetero	INTERGENIC
SBS	Chr9	12057496	G-A	Hetero	INTERGENIC
SBS	Chr9	12058504	A-T	Hetero	INTERGENIC
SBS	Chr10	14731019	C-T	Hetero	INTERGENIC
SBS	Chr11	11430787	T-C	Hetero	INTERGENIC
SBS	Chr11	15412895	C-T	Hetero	INTERGENIC
SBS	Chr11	19778207	T-A	Hetero	INTERGENIC
SBS	Chr12	14961889	C-T	Homo	INTERGENIC
SBS	Chr12	25069914	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	6237678	6237679	1	OsKitaake05g064200
Deletion	Chr5	7422122	7422134	12
Deletion	Chr12	8186932	8186934	2
Deletion	Chr12	11434905	11434918	13
Deletion	Chr1	17855001	17890000	34999	2
Deletion	Chr1	17895001	18219000	323999	20
Deletion	Chr6	22695799	22695801	2
Deletion	Chr7	28847225	28847226	1	OsKitaake07g275300
Deletion	Chr2	29670107	29670110	3
Deletion	Chr1	39477199	39477205	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	18808113	Chr6	7751991	2
Translocation	Chr9	18808591	Chr6	7751682	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes