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Mutant Information

Mutant Name	FN1076-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1076-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10552606 C-T Hetero INTERGENIC
SBS Chr1 12312064 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g149400
SBS Chr1 24328907 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g234201
SBS Chr1 26027887 C-T Homo INTRON
SBS Chr1 41547076 C-T Hetero INTRON
SBS Chr2 32383237 G-A Hetero INTERGENIC
SBS Chr3 3216979 C-T Homo UTR_3_PRIME
SBS Chr3 17549096 C-G Homo INTERGENIC
SBS Chr3 25917978 G-A Hetero INTERGENIC
SBS Chr3 28160453 C-T Hetero INTERGENIC
SBS Chr3 32072834 G-A Hetero INTRON
SBS Chr3 32073180 A-T Hetero INTRON
SBS Chr4 3479040 G-T Hetero INTERGENIC
SBS Chr4 17881915 C-T Homo INTERGENIC
SBS Chr4 21818747 C-G Homo INTERGENIC
SBS Chr5 1254503 C-T Hetero INTERGENIC
SBS Chr5 4070905 A-G Hetero INTERGENIC
SBS Chr5 13977151 A-G Homo INTERGENIC
SBS Chr5 18459430 T-C Homo INTERGENIC
SBS Chr5 26447051 C-T Hetero INTERGENIC
SBS Chr6 1716723 C-T Hetero INTERGENIC
SBS Chr6 2519701 A-G Hetero INTERGENIC
SBS Chr6 14258366 C-T Homo INTERGENIC
SBS Chr6 22089710 G-T Homo INTERGENIC
SBS Chr8 13332929 C-A Homo INTERGENIC
SBS Chr8 17392177 G-A Homo INTERGENIC
SBS Chr9 1930296 A-G Homo INTERGENIC
SBS Chr9 20668591 C-A Hetero UTR_5_PRIME
SBS Chr9 20871634 C-T Hetero INTERGENIC
SBS Chr10 11242919 A-G Hetero INTRON
SBS Chr10 17133019 G-A Hetero INTERGENIC
SBS Chr12 6967640 A-T Hetero INTRON
SBS Chr12 20468539 G-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3785433 3785436 3
Deletion Chr12 10060423 10060424 1
Deletion Chr11 13788426 13788428 2
Deletion Chr7 14841010 14841011 1
Deletion Chr1 14909001 14934000 24999
Deletion Chr1 15195042 15195043 1
Deletion Chr10 15762366 15762454 88
Deletion Chr1 18319526 18319528 2
Deletion Chr5 18794759 18794767 8
Deletion Chr3 24260049 24260055 6 OsKitaake03g259300

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18828934 18828937 2
Insertion Chr4 22766864 22766868 3
Insertion Chr8 6738509 6738512 2
Insertion Chr8 26682322 26682325 2
Insertion Chr11 2634256 2634259 2
Insertion Chr11 6167908 6167910 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 9907805 9914450

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 1698313 Chr1 23502578 OsKitaake01g225300
Translocation Chr4 1698326 Chr1 23503224
Translocation Chr10 13498380 Chr4 32967249 OsKitaake10g081200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10552606	C-T	Hetero	INTERGENIC
SBS	Chr1	12312064	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g149400
SBS	Chr1	24328907	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g234201
SBS	Chr1	26027887	C-T	Homo	INTRON
SBS	Chr1	41547076	C-T	Hetero	INTRON
SBS	Chr2	32383237	G-A	Hetero	INTERGENIC
SBS	Chr3	3216979	C-T	Homo	UTR_3_PRIME
SBS	Chr3	17549096	C-G	Homo	INTERGENIC
SBS	Chr3	25917978	G-A	Hetero	INTERGENIC
SBS	Chr3	28160453	C-T	Hetero	INTERGENIC
SBS	Chr3	32072834	G-A	Hetero	INTRON
SBS	Chr3	32073180	A-T	Hetero	INTRON
SBS	Chr4	3479040	G-T	Hetero	INTERGENIC
SBS	Chr4	17881915	C-T	Homo	INTERGENIC
SBS	Chr4	21818747	C-G	Homo	INTERGENIC
SBS	Chr5	1254503	C-T	Hetero	INTERGENIC
SBS	Chr5	4070905	A-G	Hetero	INTERGENIC
SBS	Chr5	13977151	A-G	Homo	INTERGENIC
SBS	Chr5	18459430	T-C	Homo	INTERGENIC
SBS	Chr5	26447051	C-T	Hetero	INTERGENIC
SBS	Chr6	1716723	C-T	Hetero	INTERGENIC
SBS	Chr6	2519701	A-G	Hetero	INTERGENIC
SBS	Chr6	14258366	C-T	Homo	INTERGENIC
SBS	Chr6	22089710	G-T	Homo	INTERGENIC
SBS	Chr8	13332929	C-A	Homo	INTERGENIC
SBS	Chr8	17392177	G-A	Homo	INTERGENIC
SBS	Chr9	1930296	A-G	Homo	INTERGENIC
SBS	Chr9	20668591	C-A	Hetero	UTR_5_PRIME
SBS	Chr9	20871634	C-T	Hetero	INTERGENIC
SBS	Chr10	11242919	A-G	Hetero	INTRON
SBS	Chr10	17133019	G-A	Hetero	INTERGENIC
SBS	Chr12	6967640	A-T	Hetero	INTRON
SBS	Chr12	20468539	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3785433	3785436	3
Deletion	Chr12	10060423	10060424	1
Deletion	Chr11	13788426	13788428	2
Deletion	Chr7	14841010	14841011	1
Deletion	Chr1	14909001	14934000	24999
Deletion	Chr1	15195042	15195043	1
Deletion	Chr10	15762366	15762454	88
Deletion	Chr1	18319526	18319528	2
Deletion	Chr5	18794759	18794767	8
Deletion	Chr3	24260049	24260055	6	OsKitaake03g259300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9907805	9914450

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes