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Mutant Information

Mutant Name	FN1085-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1085-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17047602 C-T Homo INTERGENIC
SBS Chr1 22705541 C-G Hetero INTRON
SBS Chr1 37570897 C-T Hetero INTERGENIC
SBS Chr1 37913859 C-T Homo INTERGENIC
SBS Chr2 8266547 C-T Hetero INTERGENIC
SBS Chr2 13724233 T-A Hetero INTERGENIC
SBS Chr2 18582894 T-A Hetero INTERGENIC
SBS Chr2 19259277 C-T Hetero INTRON
SBS Chr2 34471469 C-A Hetero INTERGENIC
SBS Chr3 8255208 C-T Hetero INTERGENIC
SBS Chr3 8255209 A-T Hetero INTERGENIC
SBS Chr3 10665116 G-T Hetero INTERGENIC
SBS Chr3 17505753 G-T Homo INTERGENIC
SBS Chr3 25204051 G-A Hetero INTERGENIC
SBS Chr3 32214252 C-T Hetero INTERGENIC
SBS Chr4 12480988 T-A Hetero INTERGENIC
SBS Chr4 14074651 C-T Homo INTERGENIC
SBS Chr4 33535541 C-T Hetero INTERGENIC
SBS Chr4 36811634 A-G Hetero INTERGENIC
SBS Chr5 8493469 C-T Hetero INTERGENIC
SBS Chr5 29872815 G-T Hetero INTERGENIC
SBS Chr6 18145905 A-G Hetero INTERGENIC
SBS Chr6 23424737 G-A Hetero INTERGENIC
SBS Chr6 29310403 G-A Hetero INTERGENIC
SBS Chr7 6828568 C-A Homo SYNONYMOUS_CODING
SBS Chr7 7959906 C-T Hetero INTERGENIC
SBS Chr7 10515627 G-A Hetero INTERGENIC
SBS Chr7 21180123 G-C Homo INTERGENIC
SBS Chr7 25134652 C-A Hetero UTR_3_PRIME
SBS Chr8 5486782 T-A Hetero INTRON
SBS Chr8 12518363 C-A Homo INTERGENIC
SBS Chr8 13485994 C-T Hetero INTERGENIC
SBS Chr8 15853777 G-A Homo INTERGENIC
SBS Chr8 20707986 C-T Homo INTERGENIC
SBS Chr9 18483751 G-A Hetero UTR_3_PRIME
SBS Chr9 22057866 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g197500
SBS Chr11 1810666 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 9242650 T-C Hetero UTR_5_PRIME
SBS Chr11 9430943 G-A Hetero INTRON
SBS Chr11 17695370 C-T Hetero INTERGENIC
SBS Chr11 19986510 G-T Hetero INTRON
SBS Chr12 26515071 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2810001 2853000 42999 5
Deletion Chr2 4605200 4605202 2
Deletion Chr11 5831927 5832153 226
Deletion Chr6 8357048 8357052 4
Deletion Chr11 9151001 9162000 10999
Deletion Chr11 14438961 14438962 1
Deletion Chr5 15137405 15137410 5
Deletion Chr8 21333512 21333514 2
Deletion Chr4 22629146 22629148 2
Deletion Chr7 22984889 22984890 1
Deletion Chr12 23841832 23841833 1
Deletion Chr5 26289626 26289637 11
Deletion Chr6 30034166 30034167 1
Deletion Chr1 36992610 36992614 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6601361 6601366 4
Insertion Chr10 18382711 18382714 2
Insertion Chr10 18686981 18686986 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17047602	C-T	Homo	INTERGENIC
SBS	Chr1	22705541	C-G	Hetero	INTRON
SBS	Chr1	37570897	C-T	Hetero	INTERGENIC
SBS	Chr1	37913859	C-T	Homo	INTERGENIC
SBS	Chr2	8266547	C-T	Hetero	INTERGENIC
SBS	Chr2	13724233	T-A	Hetero	INTERGENIC
SBS	Chr2	18582894	T-A	Hetero	INTERGENIC
SBS	Chr2	19259277	C-T	Hetero	INTRON
SBS	Chr2	34471469	C-A	Hetero	INTERGENIC
SBS	Chr3	8255208	C-T	Hetero	INTERGENIC
SBS	Chr3	8255209	A-T	Hetero	INTERGENIC
SBS	Chr3	10665116	G-T	Hetero	INTERGENIC
SBS	Chr3	17505753	G-T	Homo	INTERGENIC
SBS	Chr3	25204051	G-A	Hetero	INTERGENIC
SBS	Chr3	32214252	C-T	Hetero	INTERGENIC
SBS	Chr4	12480988	T-A	Hetero	INTERGENIC
SBS	Chr4	14074651	C-T	Homo	INTERGENIC
SBS	Chr4	33535541	C-T	Hetero	INTERGENIC
SBS	Chr4	36811634	A-G	Hetero	INTERGENIC
SBS	Chr5	8493469	C-T	Hetero	INTERGENIC
SBS	Chr5	29872815	G-T	Hetero	INTERGENIC
SBS	Chr6	18145905	A-G	Hetero	INTERGENIC
SBS	Chr6	23424737	G-A	Hetero	INTERGENIC
SBS	Chr6	29310403	G-A	Hetero	INTERGENIC
SBS	Chr7	6828568	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	7959906	C-T	Hetero	INTERGENIC
SBS	Chr7	10515627	G-A	Hetero	INTERGENIC
SBS	Chr7	21180123	G-C	Homo	INTERGENIC
SBS	Chr7	25134652	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	5486782	T-A	Hetero	INTRON
SBS	Chr8	12518363	C-A	Homo	INTERGENIC
SBS	Chr8	13485994	C-T	Hetero	INTERGENIC
SBS	Chr8	15853777	G-A	Homo	INTERGENIC
SBS	Chr8	20707986	C-T	Homo	INTERGENIC
SBS	Chr9	18483751	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	22057866	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g197500
SBS	Chr11	1810666	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	9242650	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	9430943	G-A	Hetero	INTRON
SBS	Chr11	17695370	C-T	Hetero	INTERGENIC
SBS	Chr11	19986510	G-T	Hetero	INTRON
SBS	Chr12	26515071	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2810001	2853000	42999	5
Deletion	Chr2	4605200	4605202	2
Deletion	Chr11	5831927	5832153	226
Deletion	Chr6	8357048	8357052	4
Deletion	Chr11	9151001	9162000	10999
Deletion	Chr11	14438961	14438962	1
Deletion	Chr5	15137405	15137410	5
Deletion	Chr8	21333512	21333514	2
Deletion	Chr4	22629146	22629148	2
Deletion	Chr7	22984889	22984890	1
Deletion	Chr12	23841832	23841833	1
Deletion	Chr5	26289626	26289637	11
Deletion	Chr6	30034166	30034167	1
Deletion	Chr1	36992610	36992614	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes