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| Mutant Information |
|---|
| Mutant Name | FN1120-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1120-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 313658 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24525140 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 24701781 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33445294 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g342400 |
| SBS | Chr1 | 43682717 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g485600 |
| SBS | Chr2 | 5185174 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12649419 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2217504 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g031900 |
| SBS | Chr3 | 8430252 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18348772 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32321921 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17161434 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 19913377 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 11089027 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 17159419 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 9571215 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 19618658 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15149824 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 19144474 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6939314 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 11335118 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g067000 |
| SBS | Chr10 | 16581397 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 17337098 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18033899 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18033900 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 30730 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 935363 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 22710213 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 29425362 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29425363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 294296 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1420411 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22787976 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23247817 | A-T | Hetero | INTRON |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 4361001 | 4469000 | 107999 | 17 |
| Deletion | Chr10 | 5118636 | 5118637 | 1 | OsKitaake10g036700 |
| Deletion | Chr4 | 26470338 | 26470340 | 2 | |
| Deletion | Chr5 | 30223346 | 30223347 | 1 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 20142344 | 20142347 | 2 | |
| Insertion | Chr6 | 25025516 | 25025519 | 2 | |
| Insertion | Chr7 | 704969 | 704972 | 2 | |
| Insertion | Chr8 | 7447863 | 7447866 | 2 | |
| Insertion | Chr11 | 20045049 | 20045057 | 7 | |
| Insertion | Chr5 | 15424490 | 15424492 | 1 | OsKitaake05g118300  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 7718856 | 7779947 | |
| Inversion | Chr10 | 7718879 | 7779952 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 16242157 | Chr2 | 35929541 | |
| Translocation | Chr8 | 16242437 | Chr2 | 35929540 |