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Mutant Information

Mutant Name	FN1124-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1124-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3582110 T-C Hetero INTERGENIC
SBS Chr1 6383431 A-G Hetero INTRON
SBS Chr1 13519583 G-C Hetero INTERGENIC
SBS Chr1 17406834 C-T Hetero INTERGENIC
SBS Chr1 20565552 C-T Homo INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 37340298 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g398500
SBS Chr2 1588499 T-A Homo INTERGENIC
SBS Chr2 5267935 G-A Homo INTERGENIC
SBS Chr2 8690853 C-T Homo INTRON
SBS Chr2 16634432 G-A Hetero INTERGENIC
SBS Chr2 18158451 C-G Hetero INTERGENIC
SBS Chr3 10062231 C-T Hetero INTRON
SBS Chr3 19074999 A-G Homo INTERGENIC
SBS Chr4 1995401 C-A Homo INTERGENIC
SBS Chr4 8808582 T-A Homo UTR_5_PRIME
SBS Chr5 16555509 T-C Hetero INTERGENIC
SBS Chr5 28219990 G-A Hetero INTERGENIC
SBS Chr6 6534950 G-A Homo INTERGENIC
SBS Chr6 8690760 T-A Hetero INTERGENIC
SBS Chr7 10337203 G-A Hetero INTERGENIC
SBS Chr8 163574 G-A Homo INTERGENIC
SBS Chr8 190779 T-A Homo INTRON
SBS Chr8 4154588 A-T Hetero INTERGENIC
SBS Chr8 8536152 A-C Hetero INTERGENIC
SBS Chr8 9488059 T-A Hetero INTERGENIC
SBS Chr8 20459490 C-T Homo INTERGENIC
SBS Chr8 22943403 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g175800
SBS Chr11 5244617 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 11012676 G-T Hetero INTERGENIC
SBS Chr11 11425273 A-G Hetero INTERGENIC
SBS Chr11 18830400 A-T Hetero INTERGENIC
SBS Chr11 20579995 A-G Hetero INTERGENIC
SBS Chr11 28664917 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g234800
SBS Chr12 1644515 T-A Homo INTERGENIC
SBS Chr12 1917878 C-T Homo INTERGENIC
SBS Chr12 12222054 G-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 58001 335000 276999 18
Deletion Chr8 12807026 12807027 1
Deletion Chr7 12991964 12992031 67
Deletion Chr7 24181624 24181626 2
Deletion Chr1 25771756 25771758 2
Deletion Chr12 26416853 26416854 1
Deletion Chr5 29108001 29136000 27999 6
Deletion Chr4 35979001 36003000 23999 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7391826 7391836 9
Insertion Chr9 15238411 15238414 2
Insertion Chr9 18060035 18060038 2
Insertion Chr12 11707370 11707373 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3863688 4035866 OsKitaake12g054900
Inversion Chr1 7426470 7522443
Inversion Chr1 7426497 7522445

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2375992 Chr1 32583188 OsKitaake01g330400
Translocation Chr5 2377045 Chr1 32583186 OsKitaake01g330400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3582110	T-C	Hetero	INTERGENIC
SBS	Chr1	6383431	A-G	Hetero	INTRON
SBS	Chr1	13519583	G-C	Hetero	INTERGENIC
SBS	Chr1	17406834	C-T	Hetero	INTERGENIC
SBS	Chr1	20565552	C-T	Homo	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	37340298	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g398500
SBS	Chr2	1588499	T-A	Homo	INTERGENIC
SBS	Chr2	5267935	G-A	Homo	INTERGENIC
SBS	Chr2	8690853	C-T	Homo	INTRON
SBS	Chr2	16634432	G-A	Hetero	INTERGENIC
SBS	Chr2	18158451	C-G	Hetero	INTERGENIC
SBS	Chr3	10062231	C-T	Hetero	INTRON
SBS	Chr3	19074999	A-G	Homo	INTERGENIC
SBS	Chr4	1995401	C-A	Homo	INTERGENIC
SBS	Chr4	8808582	T-A	Homo	UTR_5_PRIME
SBS	Chr5	16555509	T-C	Hetero	INTERGENIC
SBS	Chr5	28219990	G-A	Hetero	INTERGENIC
SBS	Chr6	6534950	G-A	Homo	INTERGENIC
SBS	Chr6	8690760	T-A	Hetero	INTERGENIC
SBS	Chr7	10337203	G-A	Hetero	INTERGENIC
SBS	Chr8	163574	G-A	Homo	INTERGENIC
SBS	Chr8	190779	T-A	Homo	INTRON
SBS	Chr8	4154588	A-T	Hetero	INTERGENIC
SBS	Chr8	8536152	A-C	Hetero	INTERGENIC
SBS	Chr8	9488059	T-A	Hetero	INTERGENIC
SBS	Chr8	20459490	C-T	Homo	INTERGENIC
SBS	Chr8	22943403	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g175800
SBS	Chr11	5244617	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	11012676	G-T	Hetero	INTERGENIC
SBS	Chr11	11425273	A-G	Hetero	INTERGENIC
SBS	Chr11	18830400	A-T	Hetero	INTERGENIC
SBS	Chr11	20579995	A-G	Hetero	INTERGENIC
SBS	Chr11	28664917	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g234800
SBS	Chr12	1644515	T-A	Homo	INTERGENIC
SBS	Chr12	1917878	C-T	Homo	INTERGENIC
SBS	Chr12	12222054	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	58001	335000	276999	18
Deletion	Chr8	12807026	12807027	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr7	24181624	24181626	2
Deletion	Chr1	25771756	25771758	2
Deletion	Chr12	26416853	26416854	1
Deletion	Chr5	29108001	29136000	27999	6
Deletion	Chr4	35979001	36003000	23999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3863688	4035866	OsKitaake12g054900
Inversion	Chr1	7426470	7522443
Inversion	Chr1	7426497	7522445

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes