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| Mutant Information |
|---|
| Mutant Name | FN1142-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1142-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 9141872 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22705704 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29212421 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 36362942 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 17757800 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19743826 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21341026 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32303234 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 303920 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 25849379 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 35887642 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4643466 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6031275 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 14657265 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 17257105 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28614685 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8683683 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14592809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23438801 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7695180 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 21015991 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16704873 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4886600 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 9512960 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10066116 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12810540 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21346568 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 4426471 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26128780 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g211100 |
| SBS | Chr11 | 26128792 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g211100 |
| SBS | Chr12 | 15465582 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21354525 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 21901701 | A-G | Homo | UTR_5_PRIME |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3032224 | 3032390 | 166 | OsKitaake05g035600 |
| Deletion | Chr10 | 4231454 | 4231580 | 126 | |
| Deletion | Chr8 | 5072790 | 5073158 | 368 | |
| Deletion | Chr8 | 6269242 | 6269423 | 181 | |
| Deletion | Chr4 | 10681028 | 10681036 | 8 | |
| Deletion | Chr7 | 13112496 | 13112497 | 1 | |
| Deletion | Chr12 | 21342233 | 21342240 | 7 | |
| Deletion | Chr3 | 23345001 | 23535000 | 189999 | 18 |
| Deletion | Chr8 | 25555102 | 25555103 | 1 | OsKitaake08g201700 |
| Deletion | Chr11 | 26104205 | 26104206 | 1 | |
| Deletion | Chr3 | 26640921 | 26640985 | 64 | |
| Deletion | Chr8 | 28928299 | 28928306 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2992859 | 2992862 | 2 | |
| Insertion | Chr11 | 2126639 | 2126642 | 2 | |
| Insertion | Chr9 | 9276640 | 9276643 | 2 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 502413 | Chr8 | 9747475 | |
| Translocation | Chr12 | 19434290 | Chr7 | 20973935 | OsKitaake12g145500 |
| Translocation | Chr7 | 23474423 | Chr4 | 14950775 | OsKitaake07g205600 |
| Translocation | Chr7 | 23852429 | Chr2 | 36067616 | OsKitaake02g380100 |
| Translocation | Chr7 | 23853622 | Chr2 | 36067606 | OsKitaake02g380100 |