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Mutant Information

Mutant Name	FN1153-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1153-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14682743 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g166200
SBS Chr1 31904654 C-T Hetero INTERGENIC
SBS Chr2 16136434 C-T Homo INTRON
SBS Chr2 28549073 C-T Homo INTERGENIC
SBS Chr3 7680411 G-T Hetero UTR_5_PRIME
SBS Chr4 14716936 C-T Hetero INTERGENIC
SBS Chr4 14743025 C-T Hetero INTERGENIC
SBS Chr4 22352165 G-T Hetero INTERGENIC
SBS Chr4 23074060 C-A Homo INTERGENIC
SBS Chr5 18533578 A-G Homo INTERGENIC
SBS Chr5 21574190 G-C Homo INTERGENIC
SBS Chr6 8401242 C-T Hetero INTERGENIC
SBS Chr6 8987901 A-G Hetero INTERGENIC
SBS Chr6 14912305 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Hetero INTRON
SBS Chr6 18776249 C-T Hetero INTRON
SBS Chr6 29078718 T-C Homo INTERGENIC
SBS Chr7 10055958 T-A Hetero INTERGENIC
SBS Chr7 12938992 A-T Hetero INTERGENIC
SBS Chr7 14361648 T-C Hetero INTERGENIC
SBS Chr7 15810543 C-T Homo INTERGENIC
SBS Chr7 23374718 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g204000
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 8970413 G-A Hetero INTERGENIC
SBS Chr8 9043775 C-T Hetero INTERGENIC
SBS Chr8 13501568 G-A Hetero INTERGENIC
SBS Chr8 20399226 G-C Hetero INTERGENIC
SBS Chr8 27633710 A-G Homo INTERGENIC
SBS Chr9 4784108 G-C Hetero INTERGENIC
SBS Chr9 19631266 T-A Hetero SYNONYMOUS_CODING
SBS Chr11 21418739 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g169251
SBS Chr11 26564182 G-T Hetero INTERGENIC
SBS Chr12 6871361 T-C Hetero INTERGENIC
SBS Chr12 25170650 G-A Homo SYNONYMOUS_CODING

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1485718 1486109 391
Deletion Chr11 1602070 1602081 11 OsKitaake11g021100
Deletion Chr8 3488881 3488882 1
Deletion Chr12 4185913 4185925 12
Deletion Chr2 7262412 7262417 5 OsKitaake02g097400
Deletion Chr11 13015001 13340000 324999 5
Deletion Chr9 13793340 13793341 1
Deletion Chr2 14903758 14903759 1
Deletion Chr1 15249288 15249295 7 OsKitaake01g145000
Deletion Chr6 20469425 20469429 4
Deletion Chr10 21228763 21228770 7 OsKitaake10g165100
Deletion Chr12 21729927 21729935 8
Deletion Chr3 25376774 25376775 1
Deletion Chr3 28647001 28699000 51999 6
Deletion Chr5 29042933 29042935 2
Deletion Chr3 31835280 31835288 8
Deletion Chr3 33167855 33167856 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 11331254 11331258 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13130809 13150161

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 21302550 Chr1 41422130
Translocation Chr4 21302552 Chr1 41421983

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14682743	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g166200
SBS	Chr1	31904654	C-T	Hetero	INTERGENIC
SBS	Chr2	16136434	C-T	Homo	INTRON
SBS	Chr2	28549073	C-T	Homo	INTERGENIC
SBS	Chr3	7680411	G-T	Hetero	UTR_5_PRIME
SBS	Chr4	14716936	C-T	Hetero	INTERGENIC
SBS	Chr4	14743025	C-T	Hetero	INTERGENIC
SBS	Chr4	22352165	G-T	Hetero	INTERGENIC
SBS	Chr4	23074060	C-A	Homo	INTERGENIC
SBS	Chr5	18533578	A-G	Homo	INTERGENIC
SBS	Chr5	21574190	G-C	Homo	INTERGENIC
SBS	Chr6	8401242	C-T	Hetero	INTERGENIC
SBS	Chr6	8987901	A-G	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Hetero	INTRON
SBS	Chr6	18776249	C-T	Hetero	INTRON
SBS	Chr6	29078718	T-C	Homo	INTERGENIC
SBS	Chr7	10055958	T-A	Hetero	INTERGENIC
SBS	Chr7	12938992	A-T	Hetero	INTERGENIC
SBS	Chr7	14361648	T-C	Hetero	INTERGENIC
SBS	Chr7	15810543	C-T	Homo	INTERGENIC
SBS	Chr7	23374718	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g204000
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	8970413	G-A	Hetero	INTERGENIC
SBS	Chr8	9043775	C-T	Hetero	INTERGENIC
SBS	Chr8	13501568	G-A	Hetero	INTERGENIC
SBS	Chr8	20399226	G-C	Hetero	INTERGENIC
SBS	Chr8	27633710	A-G	Homo	INTERGENIC
SBS	Chr9	4784108	G-C	Hetero	INTERGENIC
SBS	Chr9	19631266	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	21418739	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g169251
SBS	Chr11	26564182	G-T	Hetero	INTERGENIC
SBS	Chr12	6871361	T-C	Hetero	INTERGENIC
SBS	Chr12	25170650	G-A	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1485718	1486109	391
Deletion	Chr11	1602070	1602081	11	OsKitaake11g021100
Deletion	Chr8	3488881	3488882	1
Deletion	Chr12	4185913	4185925	12
Deletion	Chr2	7262412	7262417	5	OsKitaake02g097400
Deletion	Chr11	13015001	13340000	324999	5
Deletion	Chr9	13793340	13793341	1
Deletion	Chr2	14903758	14903759	1
Deletion	Chr1	15249288	15249295	7	OsKitaake01g145000
Deletion	Chr6	20469425	20469429	4
Deletion	Chr10	21228763	21228770	7	OsKitaake10g165100
Deletion	Chr12	21729927	21729935	8
Deletion	Chr3	25376774	25376775	1
Deletion	Chr3	28647001	28699000	51999	6
Deletion	Chr5	29042933	29042935	2
Deletion	Chr3	31835280	31835288	8
Deletion	Chr3	33167855	33167856	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13130809	13150161

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes