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Mutant Information

Mutant Name	FN1206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1206-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16907742 G-A Hetero INTERGENIC
SBS Chr1 22303819 G-A Hetero INTERGENIC
SBS Chr1 39756653 C-T Hetero INTERGENIC
SBS Chr1 44106700 C-A Homo INTERGENIC
SBS Chr2 17945579 A-C Hetero INTERGENIC
SBS Chr3 24107912 G-A Homo INTERGENIC
SBS Chr3 27813812 T-A Hetero INTERGENIC
SBS Chr4 2278116 G-A Homo INTERGENIC
SBS Chr4 15930015 C-T Hetero INTERGENIC
SBS Chr4 31337644 G-A Hetero INTERGENIC
SBS Chr5 7646170 A-T Hetero INTERGENIC
SBS Chr5 11319552 G-T Homo INTERGENIC
SBS Chr5 18948081 C-T Hetero INTRON
SBS Chr5 19158325 C-T Homo INTERGENIC
SBS Chr6 21684934 C-T Hetero INTERGENIC
SBS Chr7 9937976 T-C Hetero INTERGENIC
SBS Chr8 12638809 C-T Hetero INTERGENIC
SBS Chr10 8155382 C-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr7 2294329 2294338 9
Deletion Chr8 2704318 2704327 9
Deletion Chr5 6975043 6975046 3
Deletion Chr1 12550017 12550019 2
Deletion Chr9 20150602 20150614 12
Deletion Chr1 22442796 22442798 2
Deletion Chr7 26091602 26091604 2
Deletion Chr1 37760001 37925000 164999 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr10 142479 142482 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 37464096 37758296

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14889512 Chr1 32178035 OsKitaake01g325100
Translocation Chr9 14889518 Chr1 32177858 OsKitaake01g325100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16907742	G-A	Hetero	INTERGENIC
SBS	Chr1	22303819	G-A	Hetero	INTERGENIC
SBS	Chr1	39756653	C-T	Hetero	INTERGENIC
SBS	Chr1	44106700	C-A	Homo	INTERGENIC
SBS	Chr2	17945579	A-C	Hetero	INTERGENIC
SBS	Chr3	24107912	G-A	Homo	INTERGENIC
SBS	Chr3	27813812	T-A	Hetero	INTERGENIC
SBS	Chr4	2278116	G-A	Homo	INTERGENIC
SBS	Chr4	15930015	C-T	Hetero	INTERGENIC
SBS	Chr4	31337644	G-A	Hetero	INTERGENIC
SBS	Chr5	7646170	A-T	Hetero	INTERGENIC
SBS	Chr5	11319552	G-T	Homo	INTERGENIC
SBS	Chr5	18948081	C-T	Hetero	INTRON
SBS	Chr5	19158325	C-T	Homo	INTERGENIC
SBS	Chr6	21684934	C-T	Hetero	INTERGENIC
SBS	Chr7	9937976	T-C	Hetero	INTERGENIC
SBS	Chr8	12638809	C-T	Hetero	INTERGENIC
SBS	Chr10	8155382	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr7	2294329	2294338	9
Deletion	Chr8	2704318	2704327	9
Deletion	Chr5	6975043	6975046	3
Deletion	Chr1	12550017	12550019	2
Deletion	Chr9	20150602	20150614	12
Deletion	Chr1	22442796	22442798	2
Deletion	Chr7	26091602	26091604	2
Deletion	Chr1	37760001	37925000	164999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	37464096	37758296

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes