Search Kitaake

Mutant Information

Mutant Name	FN1229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1229-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41742364 C-T Homo INTRON
SBS Chr2 3687569 T-G Hetero INTERGENIC
SBS Chr2 20388691 G-C Hetero INTERGENIC
SBS Chr3 24991774 C-A Hetero INTERGENIC
SBS Chr4 5724295 T-A Homo INTERGENIC
SBS Chr4 7026637 G-A Homo INTERGENIC
SBS Chr4 28361915 C-T Homo INTERGENIC
SBS Chr4 36885010 G-T Homo UTR_3_PRIME
SBS Chr5 9389731 A-G Hetero INTERGENIC
SBS Chr6 22384530 A-T Hetero INTERGENIC
SBS Chr6 23914087 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g211700
SBS Chr7 12441609 C-T Hetero INTERGENIC
SBS Chr7 13255857 T-C Hetero INTRON
SBS Chr7 13695277 C-G Hetero INTERGENIC
SBS Chr7 25840212 C-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Hetero INTERGENIC
SBS Chr8 20486086 C-T Hetero INTERGENIC
SBS Chr8 21900685 C-T Hetero INTERGENIC
SBS Chr9 786091 G-A Hetero INTERGENIC
SBS Chr9 860230 C-T Hetero INTERGENIC
SBS Chr9 3051491 A-T Hetero INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 8803259 A-C Hetero INTERGENIC
SBS Chr9 10964777 A-T Homo UTR_3_PRIME
SBS Chr9 10984169 T-A Homo INTRON
SBS Chr10 10592565 G-A Hetero INTERGENIC
SBS Chr10 12273320 T-A Hetero INTERGENIC
SBS Chr11 14533193 A-G Hetero INTRON
SBS Chr12 4722532 T-A Homo INTERGENIC
SBS Chr12 5552720 T-A Homo INTERGENIC
SBS Chr12 12744545 T-A Hetero INTERGENIC
SBS Chr12 16871966 C-T Hetero INTERGENIC
SBS Chr12 22009582 T-A Hetero INTERGENIC
SBS Chr12 22009585 T-C Hetero INTERGENIC
SBS Chr12 22311460 T-C Hetero INTERGENIC
SBS Chr12 24730721 A-T Hetero INTERGENIC
SBS Chr12 26048852 G-T Hetero INTERGENIC
SBS Chr12 26048853 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1368001 1383000 14999 OsKitaake05g017100
Deletion Chr7 2940403 2940404 1
Deletion Chr5 4443891 4443893 2
Deletion Chr6 6806400 6806503 103
Deletion Chr4 7959749 7959759 10
Deletion Chr1 10269037 10269040 3
Deletion Chr8 11428001 11451000 22999 OsKitaake08g101301
Deletion Chr9 11642161 11642167 6
Deletion Chr12 12995779 12995780 1
Deletion Chr8 18703001 18819000 115999 10
Deletion Chr10 19373001 19386000 12999 OsKitaake10g141100
Deletion Chr11 22913779 22913783 4 OsKitaake11g181400
Deletion Chr4 24462001 24474000 11999
Deletion Chr4 27661001 27674000 12999 OsKitaake04g203600
Deletion Chr4 31730826 31730830 4
Deletion Chr1 36304001 36312000 7999

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32310019 32310021 1
Insertion Chr1 44244958 44244961 2
Insertion Chr6 13823967 13823972 4
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300
Insertion Chr5 30225097 30225105 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14100258 14145109 OsKitaake11g117800
Inversion Chr2 16216140 16647348
Inversion Chr2 16216152 16647361

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41742364	C-T	Homo	INTRON
SBS	Chr2	3687569	T-G	Hetero	INTERGENIC
SBS	Chr2	20388691	G-C	Hetero	INTERGENIC
SBS	Chr3	24991774	C-A	Hetero	INTERGENIC
SBS	Chr4	5724295	T-A	Homo	INTERGENIC
SBS	Chr4	7026637	G-A	Homo	INTERGENIC
SBS	Chr4	28361915	C-T	Homo	INTERGENIC
SBS	Chr4	36885010	G-T	Homo	UTR_3_PRIME
SBS	Chr5	9389731	A-G	Hetero	INTERGENIC
SBS	Chr6	22384530	A-T	Hetero	INTERGENIC
SBS	Chr6	23914087	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g211700
SBS	Chr7	12441609	C-T	Hetero	INTERGENIC
SBS	Chr7	13255857	T-C	Hetero	INTRON
SBS	Chr7	13695277	C-G	Hetero	INTERGENIC
SBS	Chr7	25840212	C-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Hetero	INTERGENIC
SBS	Chr8	20486086	C-T	Hetero	INTERGENIC
SBS	Chr8	21900685	C-T	Hetero	INTERGENIC
SBS	Chr9	786091	G-A	Hetero	INTERGENIC
SBS	Chr9	860230	C-T	Hetero	INTERGENIC
SBS	Chr9	3051491	A-T	Hetero	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	8803259	A-C	Hetero	INTERGENIC
SBS	Chr9	10964777	A-T	Homo	UTR_3_PRIME
SBS	Chr9	10984169	T-A	Homo	INTRON
SBS	Chr10	10592565	G-A	Hetero	INTERGENIC
SBS	Chr10	12273320	T-A	Hetero	INTERGENIC
SBS	Chr11	14533193	A-G	Hetero	INTRON
SBS	Chr12	4722532	T-A	Homo	INTERGENIC
SBS	Chr12	5552720	T-A	Homo	INTERGENIC
SBS	Chr12	12744545	T-A	Hetero	INTERGENIC
SBS	Chr12	16871966	C-T	Hetero	INTERGENIC
SBS	Chr12	22009582	T-A	Hetero	INTERGENIC
SBS	Chr12	22009585	T-C	Hetero	INTERGENIC
SBS	Chr12	22311460	T-C	Hetero	INTERGENIC
SBS	Chr12	24730721	A-T	Hetero	INTERGENIC
SBS	Chr12	26048852	G-T	Hetero	INTERGENIC
SBS	Chr12	26048853	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1368001	1383000	14999	OsKitaake05g017100
Deletion	Chr7	2940403	2940404	1
Deletion	Chr5	4443891	4443893	2
Deletion	Chr6	6806400	6806503	103
Deletion	Chr4	7959749	7959759	10
Deletion	Chr1	10269037	10269040	3
Deletion	Chr8	11428001	11451000	22999	OsKitaake08g101301
Deletion	Chr9	11642161	11642167	6
Deletion	Chr12	12995779	12995780	1
Deletion	Chr8	18703001	18819000	115999	10
Deletion	Chr10	19373001	19386000	12999	OsKitaake10g141100
Deletion	Chr11	22913779	22913783	4	OsKitaake11g181400
Deletion	Chr4	24462001	24474000	11999
Deletion	Chr4	27661001	27674000	12999	OsKitaake04g203600
Deletion	Chr4	31730826	31730830	4
Deletion	Chr1	36304001	36312000	7999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14100258	14145109	OsKitaake11g117800
Inversion	Chr2	16216140	16647348
Inversion	Chr2	16216152	16647361

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes