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Mutant Information

Mutant Name	FN1231-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1231-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 144076 G-A Hetero INTERGENIC
SBS Chr2 10046532 C-G Hetero INTERGENIC
SBS Chr2 36118149 T-C Hetero INTERGENIC
SBS Chr2 36427035 T-A Hetero INTERGENIC
SBS Chr3 23365277 T-C Homo INTERGENIC
SBS Chr3 35320401 A-G Hetero INTRON
SBS Chr4 3912244 G-A Homo INTERGENIC
SBS Chr4 11145531 G-A Hetero INTERGENIC
SBS Chr4 14436998 A-C Hetero INTERGENIC
SBS Chr4 32438980 G-A Homo INTRON
SBS Chr4 34997322 G-T Homo INTERGENIC
SBS Chr5 29671907 A-G Hetero UTR_5_PRIME
SBS Chr6 15159582 G-A Homo INTRON
SBS Chr7 15241342 A-T Hetero INTERGENIC
SBS Chr8 15194306 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g118700
SBS Chr8 17564869 C-T Hetero INTRON
SBS Chr10 666712 A-G Hetero INTERGENIC
SBS Chr10 2780034 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g022800
SBS Chr10 2947777 C-G Hetero INTERGENIC
SBS Chr10 15638707 A-G Homo INTERGENIC
SBS Chr11 3255320 G-A Hetero INTERGENIC
SBS Chr11 7765059 G-A Hetero INTRON
SBS Chr12 15191899 G-T Hetero INTERGENIC
SBS Chr12 22763594 T-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 10627519 10627521 2
Deletion Chr1 12408001 12432000 23999 OsKitaake01g150000
Deletion Chr1 12438001 12480000 41999 5
Deletion Chr3 17675172 17675173 1
Deletion Chr3 17941580 17941590 10
Deletion Chr7 22036768 22036774 6
Deletion Chr3 24604329 24604337 8
Deletion Chr12 26495025 26495027 2
Deletion Chr2 29855995 29855997 2 OsKitaake02g302000
Deletion Chr1 30503001 30512000 8999 2
Deletion Chr4 32961799 32961804 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 25770943 25770947 3
Insertion Chr8 3123682 3123687 4
Insertion Chr8 6843614 6843617 2
Insertion Chr9 10160983 10160987 3

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2756322 2756729 OsKitaake07g035700
Inversion Chr12 2930152 3337327 OsKitaake12g043600
Inversion Chr1 4966917 4967285
Inversion Chr3 5695567 5695919
Inversion Chr7 6165125 6183637
Inversion Chr6 10290826 10516849
Inversion Chr6 10291000 10516920
Inversion Chr1 12411346 12697276 OsKitaake01g151900
Inversion Chr1 26502260 26502510

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5242791 Chr4 17674153
Translocation Chr7 5243538 Chr4 18854093
Translocation Chr6 5528673 Chr1 28244123
Translocation Chr7 27713070 Chr6 12548133
Translocation Chr7 27713124 Chr6 12547196

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	144076	G-A	Hetero	INTERGENIC
SBS	Chr2	10046532	C-G	Hetero	INTERGENIC
SBS	Chr2	36118149	T-C	Hetero	INTERGENIC
SBS	Chr2	36427035	T-A	Hetero	INTERGENIC
SBS	Chr3	23365277	T-C	Homo	INTERGENIC
SBS	Chr3	35320401	A-G	Hetero	INTRON
SBS	Chr4	3912244	G-A	Homo	INTERGENIC
SBS	Chr4	11145531	G-A	Hetero	INTERGENIC
SBS	Chr4	14436998	A-C	Hetero	INTERGENIC
SBS	Chr4	32438980	G-A	Homo	INTRON
SBS	Chr4	34997322	G-T	Homo	INTERGENIC
SBS	Chr5	29671907	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	15159582	G-A	Homo	INTRON
SBS	Chr7	15241342	A-T	Hetero	INTERGENIC
SBS	Chr8	15194306	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g118700
SBS	Chr8	17564869	C-T	Hetero	INTRON
SBS	Chr10	666712	A-G	Hetero	INTERGENIC
SBS	Chr10	2780034	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g022800
SBS	Chr10	2947777	C-G	Hetero	INTERGENIC
SBS	Chr10	15638707	A-G	Homo	INTERGENIC
SBS	Chr11	3255320	G-A	Hetero	INTERGENIC
SBS	Chr11	7765059	G-A	Hetero	INTRON
SBS	Chr12	15191899	G-T	Hetero	INTERGENIC
SBS	Chr12	22763594	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	10627519	10627521	2
Deletion	Chr1	12408001	12432000	23999	OsKitaake01g150000
Deletion	Chr1	12438001	12480000	41999	5
Deletion	Chr3	17675172	17675173	1
Deletion	Chr3	17941580	17941590	10
Deletion	Chr7	22036768	22036774	6
Deletion	Chr3	24604329	24604337	8
Deletion	Chr12	26495025	26495027	2
Deletion	Chr2	29855995	29855997	2	OsKitaake02g302000
Deletion	Chr1	30503001	30512000	8999	2
Deletion	Chr4	32961799	32961804	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2756322	2756729	OsKitaake07g035700
Inversion	Chr12	2930152	3337327	OsKitaake12g043600
Inversion	Chr1	4966917	4967285
Inversion	Chr3	5695567	5695919
Inversion	Chr7	6165125	6183637
Inversion	Chr6	10290826	10516849
Inversion	Chr6	10291000	10516920
Inversion	Chr1	12411346	12697276	OsKitaake01g151900
Inversion	Chr1	26502260	26502510

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes