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Mutant Information

Mutant Name	FN1232-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1232-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 17551950 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g176100
SBS Chr3 10487277 A-T Hetero INTERGENIC
SBS Chr3 10541416 G-A Hetero INTERGENIC
SBS Chr3 11979551 A-T Hetero INTERGENIC
SBS Chr3 15439447 T-C Homo INTERGENIC
SBS Chr3 33558622 A-G Hetero UTR_5_PRIME
SBS Chr3 36446924 C-A Hetero INTRON
SBS Chr4 236524 T-G Homo INTERGENIC
SBS Chr4 3496388 C-T Homo INTERGENIC
SBS Chr4 7883300 C-T Hetero UTR_3_PRIME
SBS Chr5 22644222 T-C Hetero INTRON
SBS Chr5 23360568 C-T Hetero INTERGENIC
SBS Chr5 23465148 C-T Hetero INTERGENIC
SBS Chr6 20691909 C-T Homo INTERGENIC
SBS Chr7 21506999 T-C Homo INTERGENIC
SBS Chr8 610777 C-T Hetero INTERGENIC
SBS Chr8 9441611 A-G Hetero INTERGENIC
SBS Chr8 11246879 C-A Hetero INTERGENIC
SBS Chr9 2826051 C-T Homo INTERGENIC
SBS Chr9 12974154 C-T Hetero INTERGENIC
SBS Chr11 114853 C-T Homo INTERGENIC
SBS Chr11 10246157 T-C Homo INTERGENIC
SBS Chr12 3958689 G-T Homo INTERGENIC
SBS Chr12 8300252 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1367001 1383000 15999 OsKitaake05g017100
Deletion Chr11 1690469 1690476 7
Deletion Chr11 5831927 5832153 226
Deletion Chr2 6339497 6339498 1
Deletion Chr12 7872477 7872481 4
Deletion Chr1 15381734 15381738 4
Deletion Chr7 15669982 15669984 2
Deletion Chr7 17270838 17270930 92
Deletion Chr4 17864849 17864860 11
Deletion Chr7 20785655 20785656 1
Deletion Chr2 23124092 23124094 2
Deletion Chr11 23490303 23490310 7
Deletion Chr3 28576001 28598000 21999 OsKitaake03g296500
Deletion Chr1 36717545 36717549 4

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13058529 13058532 2
Insertion Chr3 16736133 16736136 2
Insertion Chr4 7483059 7483062 2
Insertion Chr12 15728606 15728616 9
Insertion Chr6 10856 10859 2
Insertion Chr9 8005391 8005393 1
Insertion Chr10 21368120 21368123 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 21720175 21911033
Inversion Chr2 21720206 21912311

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1374561 Chr1 2093761 OsKitaake01g026200
Translocation Chr9 1374606 Chr1 2080737 OsKitaake01g026200
Translocation Chr7 2251130 Chr2 22799901 2
Translocation Chr7 2251142 Chr2 22799536 2
Translocation Chr10 8659078 Chr1 17293162 OsKitaake10g053166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	17551950	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g176100
SBS	Chr3	10487277	A-T	Hetero	INTERGENIC
SBS	Chr3	10541416	G-A	Hetero	INTERGENIC
SBS	Chr3	11979551	A-T	Hetero	INTERGENIC
SBS	Chr3	15439447	T-C	Homo	INTERGENIC
SBS	Chr3	33558622	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	36446924	C-A	Hetero	INTRON
SBS	Chr4	236524	T-G	Homo	INTERGENIC
SBS	Chr4	3496388	C-T	Homo	INTERGENIC
SBS	Chr4	7883300	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	22644222	T-C	Hetero	INTRON
SBS	Chr5	23360568	C-T	Hetero	INTERGENIC
SBS	Chr5	23465148	C-T	Hetero	INTERGENIC
SBS	Chr6	20691909	C-T	Homo	INTERGENIC
SBS	Chr7	21506999	T-C	Homo	INTERGENIC
SBS	Chr8	610777	C-T	Hetero	INTERGENIC
SBS	Chr8	9441611	A-G	Hetero	INTERGENIC
SBS	Chr8	11246879	C-A	Hetero	INTERGENIC
SBS	Chr9	2826051	C-T	Homo	INTERGENIC
SBS	Chr9	12974154	C-T	Hetero	INTERGENIC
SBS	Chr11	114853	C-T	Homo	INTERGENIC
SBS	Chr11	10246157	T-C	Homo	INTERGENIC
SBS	Chr12	3958689	G-T	Homo	INTERGENIC
SBS	Chr12	8300252	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1367001	1383000	15999	OsKitaake05g017100
Deletion	Chr11	1690469	1690476	7
Deletion	Chr11	5831927	5832153	226
Deletion	Chr2	6339497	6339498	1
Deletion	Chr12	7872477	7872481	4
Deletion	Chr1	15381734	15381738	4
Deletion	Chr7	15669982	15669984	2
Deletion	Chr7	17270838	17270930	92
Deletion	Chr4	17864849	17864860	11
Deletion	Chr7	20785655	20785656	1
Deletion	Chr2	23124092	23124094	2
Deletion	Chr11	23490303	23490310	7
Deletion	Chr3	28576001	28598000	21999	OsKitaake03g296500
Deletion	Chr1	36717545	36717549	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21720175	21911033
Inversion	Chr2	21720206	21912311

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes