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Mutant Information

Mutant Name	FN1233-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1233-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17051068 G-A Homo INTERGENIC
SBS Chr1 39007985 G-T Homo INTERGENIC
SBS Chr1 39873572 C-A Hetero INTERGENIC
SBS Chr2 4822307 T-A Homo INTERGENIC
SBS Chr2 4822308 G-A Homo INTERGENIC
SBS Chr2 15626291 C-A Hetero INTERGENIC
SBS Chr2 15713834 C-G Hetero INTERGENIC
SBS Chr2 35505042 C-T Hetero INTERGENIC
SBS Chr3 15357716 C-T Hetero INTERGENIC
SBS Chr3 24284905 A-T Hetero INTRON
SBS Chr3 33170855 T-G Hetero INTRON
SBS Chr3 34423139 T-A Hetero INTERGENIC
SBS Chr4 7864374 C-A Homo INTERGENIC
SBS Chr5 2309447 A-C Homo INTRON
SBS Chr5 11748011 G-C Hetero INTERGENIC
SBS Chr5 15881671 T-G Hetero INTERGENIC
SBS Chr5 16088626 A-T Hetero INTERGENIC
SBS Chr6 11441211 T-C Hetero INTERGENIC
SBS Chr6 14709216 A-G Hetero INTERGENIC
SBS Chr6 18786207 C-A Hetero INTRON
SBS Chr6 18786210 G-C Hetero INTRON
SBS Chr7 7717349 G-A Homo INTERGENIC
SBS Chr7 15200354 A-G Homo INTERGENIC
SBS Chr7 16919155 T-C Homo INTERGENIC
SBS Chr7 20442393 C-A Homo INTERGENIC
SBS Chr9 1667131 C-G Hetero INTERGENIC
SBS Chr9 6060386 C-T Homo INTERGENIC
SBS Chr9 6060423 A-G Homo INTERGENIC
SBS Chr9 7017587 A-T Homo INTERGENIC
SBS Chr9 17605269 G-T Hetero INTERGENIC
SBS Chr10 12013156 C-T Homo INTERGENIC
SBS Chr11 8966386 C-G Hetero INTERGENIC
SBS Chr11 9829439 A-T Hetero INTERGENIC
SBS Chr11 11089532 T-A Hetero INTERGENIC
SBS Chr11 12503706 A-G Hetero INTERGENIC
SBS Chr11 17066095 T-C Hetero INTRON
SBS Chr11 28746082 C-T Homo INTERGENIC
SBS Chr12 5794108 A-C Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 241805 241809 4
Deletion Chr6 2655344 2655348 4
Deletion Chr3 7517815 7517822 7
Deletion Chr3 9337001 9372000 34999 4
Deletion Chr6 9365762 9365763 1 OsKitaake06g111000
Deletion Chr9 11895993 11895994 1
Deletion Chr1 13053048 13053049 1
Deletion Chr8 15510257 15510259 2
Deletion Chr1 17189332 17189497 165
Deletion Chr4 18447420 18447425 5
Deletion Chr5 18856680 18856686 6
Deletion Chr9 21353470 21353477 7
Deletion Chr10 22280730 22280742 12
Deletion Chr1 36871863 36871882 19

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35778867 35778870 2
Insertion Chr2 711181 711184 2
Insertion Chr3 23801118 23801121 2
Insertion Chr5 15876840 15876843 2
Insertion Chr5 29483063 29483066 2
Insertion Chr7 27815371 27815374 2
Insertion Chr10 23539482 23539487 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1149911 1776570 OsKitaake07g025001
Inversion Chr7 1149914 1776571 OsKitaake07g025001

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 3595872 Chr1 24923138 2
Translocation Chr5 23885155 Chr1 24919122

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17051068	G-A	Homo	INTERGENIC
SBS	Chr1	39007985	G-T	Homo	INTERGENIC
SBS	Chr1	39873572	C-A	Hetero	INTERGENIC
SBS	Chr2	4822307	T-A	Homo	INTERGENIC
SBS	Chr2	4822308	G-A	Homo	INTERGENIC
SBS	Chr2	15626291	C-A	Hetero	INTERGENIC
SBS	Chr2	15713834	C-G	Hetero	INTERGENIC
SBS	Chr2	35505042	C-T	Hetero	INTERGENIC
SBS	Chr3	15357716	C-T	Hetero	INTERGENIC
SBS	Chr3	24284905	A-T	Hetero	INTRON
SBS	Chr3	33170855	T-G	Hetero	INTRON
SBS	Chr3	34423139	T-A	Hetero	INTERGENIC
SBS	Chr4	7864374	C-A	Homo	INTERGENIC
SBS	Chr5	2309447	A-C	Homo	INTRON
SBS	Chr5	11748011	G-C	Hetero	INTERGENIC
SBS	Chr5	15881671	T-G	Hetero	INTERGENIC
SBS	Chr5	16088626	A-T	Hetero	INTERGENIC
SBS	Chr6	11441211	T-C	Hetero	INTERGENIC
SBS	Chr6	14709216	A-G	Hetero	INTERGENIC
SBS	Chr6	18786207	C-A	Hetero	INTRON
SBS	Chr6	18786210	G-C	Hetero	INTRON
SBS	Chr7	7717349	G-A	Homo	INTERGENIC
SBS	Chr7	15200354	A-G	Homo	INTERGENIC
SBS	Chr7	16919155	T-C	Homo	INTERGENIC
SBS	Chr7	20442393	C-A	Homo	INTERGENIC
SBS	Chr9	1667131	C-G	Hetero	INTERGENIC
SBS	Chr9	6060386	C-T	Homo	INTERGENIC
SBS	Chr9	6060423	A-G	Homo	INTERGENIC
SBS	Chr9	7017587	A-T	Homo	INTERGENIC
SBS	Chr9	17605269	G-T	Hetero	INTERGENIC
SBS	Chr10	12013156	C-T	Homo	INTERGENIC
SBS	Chr11	8966386	C-G	Hetero	INTERGENIC
SBS	Chr11	9829439	A-T	Hetero	INTERGENIC
SBS	Chr11	11089532	T-A	Hetero	INTERGENIC
SBS	Chr11	12503706	A-G	Hetero	INTERGENIC
SBS	Chr11	17066095	T-C	Hetero	INTRON
SBS	Chr11	28746082	C-T	Homo	INTERGENIC
SBS	Chr12	5794108	A-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	241805	241809	4
Deletion	Chr6	2655344	2655348	4
Deletion	Chr3	7517815	7517822	7
Deletion	Chr3	9337001	9372000	34999	4
Deletion	Chr6	9365762	9365763	1	OsKitaake06g111000
Deletion	Chr9	11895993	11895994	1
Deletion	Chr1	13053048	13053049	1
Deletion	Chr8	15510257	15510259	2
Deletion	Chr1	17189332	17189497	165
Deletion	Chr4	18447420	18447425	5
Deletion	Chr5	18856680	18856686	6
Deletion	Chr9	21353470	21353477	7
Deletion	Chr10	22280730	22280742	12
Deletion	Chr1	36871863	36871882	19

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1149911	1776570	OsKitaake07g025001
Inversion	Chr7	1149914	1776571	OsKitaake07g025001

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes