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Mutant Information

Mutant Name	FN1247-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1247-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24076124 G-A Homo INTERGENIC
SBS Chr1 31867525 T-C Hetero INTERGENIC
SBS Chr2 30280104 T-G Hetero INTERGENIC
SBS Chr2 31068411 A-G Hetero INTERGENIC
SBS Chr2 31548517 G-A Hetero INTERGENIC
SBS Chr4 15594271 C-G Hetero INTERGENIC
SBS Chr4 15594272 G-A Hetero INTERGENIC
SBS Chr4 23692325 G-A Hetero INTERGENIC
SBS Chr4 32313065 G-A Hetero INTERGENIC
SBS Chr6 8790099 G-A Homo INTERGENIC
SBS Chr6 24557707 G-T Hetero INTRON
SBS Chr6 28351810 C-T Hetero INTERGENIC
SBS Chr6 28351811 A-C Hetero INTERGENIC
SBS Chr7 29015117 A-G Hetero INTERGENIC
SBS Chr8 17239194 G-C Homo INTERGENIC
SBS Chr8 17239623 T-A Hetero INTERGENIC
SBS Chr8 17731804 T-A Homo INTERGENIC
SBS Chr9 9840881 T-C Hetero INTERGENIC
SBS Chr9 14935541 G-T Homo INTERGENIC
SBS Chr10 8584057 G-A Hetero INTERGENIC
SBS Chr10 21600357 A-T Hetero UTR_3_PRIME

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4977188 4977206 18
Deletion Chr1 7603123 7603132 9
Deletion Chr2 8106144 8106148 4
Deletion Chr4 17527739 17527741 2
Deletion Chr3 17541603 17541604 1
Deletion Chr11 19743001 19760000 16999
Deletion Chr3 23036001 23186000 149999 10
Deletion Chr10 23868375 23868376 1
Deletion Chr11 28300881 28300883 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26782867 26782870 2
Insertion Chr2 595707 595710 2
Insertion Chr5 23978164 23978169 4
Insertion Chr9 12736075 12736078 2
Insertion Chr10 5904684 5904687 2
Insertion Chr11 15680548 15680551 2
Insertion Chr11 19465609 19465612 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8718100 9023477 2
Inversion Chr11 15594380 15639887
Inversion Chr11 15594387 15639893

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 16540764 Chr3 23037075 OsKitaake03g248900
Translocation Chr11 19758810 Chr3 23038314 OsKitaake03g248900
Translocation Chr7 28855860 Chr3 8718091 OsKitaake03g119200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24076124	G-A	Homo	INTERGENIC
SBS	Chr1	31867525	T-C	Hetero	INTERGENIC
SBS	Chr2	30280104	T-G	Hetero	INTERGENIC
SBS	Chr2	31068411	A-G	Hetero	INTERGENIC
SBS	Chr2	31548517	G-A	Hetero	INTERGENIC
SBS	Chr4	15594271	C-G	Hetero	INTERGENIC
SBS	Chr4	15594272	G-A	Hetero	INTERGENIC
SBS	Chr4	23692325	G-A	Hetero	INTERGENIC
SBS	Chr4	32313065	G-A	Hetero	INTERGENIC
SBS	Chr6	8790099	G-A	Homo	INTERGENIC
SBS	Chr6	24557707	G-T	Hetero	INTRON
SBS	Chr6	28351810	C-T	Hetero	INTERGENIC
SBS	Chr6	28351811	A-C	Hetero	INTERGENIC
SBS	Chr7	29015117	A-G	Hetero	INTERGENIC
SBS	Chr8	17239194	G-C	Homo	INTERGENIC
SBS	Chr8	17239623	T-A	Hetero	INTERGENIC
SBS	Chr8	17731804	T-A	Homo	INTERGENIC
SBS	Chr9	9840881	T-C	Hetero	INTERGENIC
SBS	Chr9	14935541	G-T	Homo	INTERGENIC
SBS	Chr10	8584057	G-A	Hetero	INTERGENIC
SBS	Chr10	21600357	A-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4977188	4977206	18
Deletion	Chr1	7603123	7603132	9
Deletion	Chr2	8106144	8106148	4
Deletion	Chr4	17527739	17527741	2
Deletion	Chr3	17541603	17541604	1
Deletion	Chr11	19743001	19760000	16999
Deletion	Chr3	23036001	23186000	149999	10
Deletion	Chr10	23868375	23868376	1
Deletion	Chr11	28300881	28300883	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8718100	9023477	2
Inversion	Chr11	15594380	15639887
Inversion	Chr11	15594387	15639893

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes