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Mutant Information

Mutant Name	FN1251-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1251-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32117323 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g323600
SBS Chr1 38599577 C-T Homo UTR_5_PRIME
SBS Chr2 22322183 G-A Hetero INTERGENIC
SBS Chr3 29086821 A-C Homo INTRON
SBS Chr4 33748540 G-A Hetero INTRON
SBS Chr5 841244 T-A Hetero INTERGENIC
SBS Chr5 27201958 T-C Homo INTERGENIC
SBS Chr6 1753678 A-G Homo INTERGENIC
SBS Chr6 7501996 G-T Hetero INTERGENIC
SBS Chr7 2787542 T-C Hetero INTERGENIC
SBS Chr7 8398825 G-A Hetero INTERGENIC
SBS Chr7 20539136 G-A Hetero INTERGENIC
SBS Chr7 28515324 T-A Homo NON_SYNONYMOUS_CODING OsKitaake07g271400
SBS Chr7 28515325 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g271400
SBS Chr8 10531458 G-A Hetero INTERGENIC
SBS Chr8 11372477 A-G Hetero INTRON
SBS Chr8 11743508 C-T Hetero INTERGENIC
SBS Chr8 27731181 C-T Hetero INTERGENIC
SBS Chr9 6977823 T-A Homo NON_SYNONYMOUS_CODING OsKitaake09g039900
SBS Chr9 14005431 C-G Hetero INTERGENIC
SBS Chr10 56235 A-T Homo INTRON
SBS Chr10 10137376 A-T Hetero INTERGENIC
SBS Chr10 21140999 G-A Hetero INTERGENIC
SBS Chr11 26183555 G-A Homo INTERGENIC
SBS Chr12 9763594 T-C Hetero INTERGENIC
SBS Chr12 16457209 C-A Hetero INTERGENIC
SBS Chr12 26320711 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 839067 839069 2
Deletion Chr1 2299740 2299744 4
Deletion Chr1 2460001 2473000 12999 6
Deletion Chr1 2566085 2566092 7
Deletion Chr9 7641682 7641683 1
Deletion Chr11 8706130 8706143 13
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr7 20671240 20671245 5
Deletion Chr9 22457085 22457087 2 OsKitaake09g204100
Deletion Chr1 23105339 23105341 2
Deletion Chr1 25422001 25668000 245999 29
Deletion Chr1 25862001 26080000 217999 20
Deletion Chr8 27179001 27259000 79999 15
Deletion Chr5 27742503 27742509 6
Deletion Chr2 28040001 28065000 24999 OsKitaake02g282900
Deletion Chr11 28667001 28709000 41999 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26947995 26947998 2
Insertion Chr4 34866232 34866236 3
Insertion Chr7 6608187 6608190 2
Insertion Chr3 21317075 21317077 1
Insertion Chr5 12633210 12633212 1

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 5424079 6036578 2
Inversion Chr6 5424090 6036578 2
Inversion Chr6 25789239 26526467 OsKitaake06g238100
Inversion Chr6 25789252 26054176 OsKitaake06g232600
Inversion Chr8 27180175 27709598 OsKitaake08g222700
Inversion Chr5 27201801 27503534 OsKitaake05g250300
Inversion Chr5 27204224 27503547 2
Inversion Chr8 27262932 27709602 OsKitaake08g224100
Inversion Chr11 28659602 28670336
Inversion Chr11 28659607 28706912

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13161314 Chr8 13883618
Translocation Chr8 21016678 Chr6 26526471 2
Translocation Chr8 21059374 Chr6 26054176 OsKitaake06g232600
Translocation Chr12 23481973 Chr2 28040446 OsKitaake12g188200
Translocation Chr12 23482011 Chr2 28040075 OsKitaake12g188200
Translocation Chr5 27201810 Chr1 30730417
Translocation Chr5 27204198 Chr1 30730415 OsKitaake05g245900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32117323	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g323600
SBS	Chr1	38599577	C-T	Homo	UTR_5_PRIME
SBS	Chr2	22322183	G-A	Hetero	INTERGENIC
SBS	Chr3	29086821	A-C	Homo	INTRON
SBS	Chr4	33748540	G-A	Hetero	INTRON
SBS	Chr5	841244	T-A	Hetero	INTERGENIC
SBS	Chr5	27201958	T-C	Homo	INTERGENIC
SBS	Chr6	1753678	A-G	Homo	INTERGENIC
SBS	Chr6	7501996	G-T	Hetero	INTERGENIC
SBS	Chr7	2787542	T-C	Hetero	INTERGENIC
SBS	Chr7	8398825	G-A	Hetero	INTERGENIC
SBS	Chr7	20539136	G-A	Hetero	INTERGENIC
SBS	Chr7	28515324	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g271400
SBS	Chr7	28515325	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g271400
SBS	Chr8	10531458	G-A	Hetero	INTERGENIC
SBS	Chr8	11372477	A-G	Hetero	INTRON
SBS	Chr8	11743508	C-T	Hetero	INTERGENIC
SBS	Chr8	27731181	C-T	Hetero	INTERGENIC
SBS	Chr9	6977823	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g039900
SBS	Chr9	14005431	C-G	Hetero	INTERGENIC
SBS	Chr10	56235	A-T	Homo	INTRON
SBS	Chr10	10137376	A-T	Hetero	INTERGENIC
SBS	Chr10	21140999	G-A	Hetero	INTERGENIC
SBS	Chr11	26183555	G-A	Homo	INTERGENIC
SBS	Chr12	9763594	T-C	Hetero	INTERGENIC
SBS	Chr12	16457209	C-A	Hetero	INTERGENIC
SBS	Chr12	26320711	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	839067	839069	2
Deletion	Chr1	2299740	2299744	4
Deletion	Chr1	2460001	2473000	12999	6
Deletion	Chr1	2566085	2566092	7
Deletion	Chr9	7641682	7641683	1
Deletion	Chr11	8706130	8706143	13
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr7	20671240	20671245	5
Deletion	Chr9	22457085	22457087	2	OsKitaake09g204100
Deletion	Chr1	23105339	23105341	2
Deletion	Chr1	25422001	25668000	245999	29
Deletion	Chr1	25862001	26080000	217999	20
Deletion	Chr8	27179001	27259000	79999	15
Deletion	Chr5	27742503	27742509	6
Deletion	Chr2	28040001	28065000	24999	OsKitaake02g282900
Deletion	Chr11	28667001	28709000	41999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5424079	6036578	2
Inversion	Chr6	5424090	6036578	2
Inversion	Chr6	25789239	26526467	OsKitaake06g238100
Inversion	Chr6	25789252	26054176	OsKitaake06g232600
Inversion	Chr8	27180175	27709598	OsKitaake08g222700
Inversion	Chr5	27201801	27503534	OsKitaake05g250300
Inversion	Chr5	27204224	27503547	2
Inversion	Chr8	27262932	27709602	OsKitaake08g224100
Inversion	Chr11	28659602	28670336
Inversion	Chr11	28659607	28706912

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes