Search Kitaake

Mutant Information

Mutant Name	FN1254-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1254-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 395743 G-T Hetero INTERGENIC
SBS Chr1 4135611 A-T Hetero INTERGENIC
SBS Chr1 37442528 G-T Hetero INTRON
SBS Chr1 38970405 C-T Homo INTERGENIC
SBS Chr2 5189841 C-T Hetero INTERGENIC
SBS Chr2 10558216 C-G Hetero INTERGENIC
SBS Chr2 11814254 C-T Homo INTRON
SBS Chr2 19572277 G-A Homo INTERGENIC
SBS Chr2 20676107 T-A Homo INTERGENIC
SBS Chr3 12601480 C-T Homo INTRON
SBS Chr3 31498016 C-T Homo INTERGENIC
SBS Chr3 35908308 T-C Hetero INTERGENIC
SBS Chr4 14603063 C-T Homo INTERGENIC
SBS Chr4 26058737 A-G Hetero INTERGENIC
SBS Chr4 33711710 C-T Homo INTRON
SBS Chr4 36278704 C-G Homo INTERGENIC
SBS Chr5 17943603 T-C Homo INTERGENIC
SBS Chr7 1120932 A-G Hetero INTERGENIC
SBS Chr7 13448669 G-C,A Hetero INTERGENIC
SBS Chr7 26181268 C-T Homo INTERGENIC
SBS Chr9 7648068 G-C Homo INTRON
SBS Chr9 13607751 A-G Hetero INTERGENIC
SBS Chr9 18379042 C-T Homo INTERGENIC
SBS Chr9 21590937 T-A Homo INTERGENIC
SBS Chr10 9573888 C-T Hetero INTERGENIC
SBS Chr10 11348288 G-T Hetero INTERGENIC
SBS Chr10 22636709 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g187300
SBS Chr11 1185295 A-G Homo INTERGENIC
SBS Chr11 4528976 G-A Hetero INTRON
SBS Chr11 11983259 T-C Hetero INTERGENIC
SBS Chr11 18921565 G-T Hetero INTERGENIC
SBS Chr12 5085556 G-A Hetero INTERGENIC
SBS Chr12 19802091 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 911861 911863 2
Deletion Chr9 2429329 2429331 2
Deletion Chr5 6588001 6641000 52999 3
Deletion Chr11 8581259 8581260 1
Deletion Chr7 8683538 8683539 1
Deletion Chr4 9480430 9480602 172
Deletion Chr5 15681001 15694000 12999 OsKitaake05g120600
Deletion Chr5 16824680 16824690 10
Deletion Chr10 18166001 18184000 17999 2
Deletion Chr4 23589001 23611000 21999 4
Deletion Chr7 28438093 28438094 1
Deletion Chr6 30822332 30822334 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 11702156 11702170 13

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 17357266 17646727

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084035 Chr3 24787142

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	395743	G-T	Hetero	INTERGENIC
SBS	Chr1	4135611	A-T	Hetero	INTERGENIC
SBS	Chr1	37442528	G-T	Hetero	INTRON
SBS	Chr1	38970405	C-T	Homo	INTERGENIC
SBS	Chr2	5189841	C-T	Hetero	INTERGENIC
SBS	Chr2	10558216	C-G	Hetero	INTERGENIC
SBS	Chr2	11814254	C-T	Homo	INTRON
SBS	Chr2	19572277	G-A	Homo	INTERGENIC
SBS	Chr2	20676107	T-A	Homo	INTERGENIC
SBS	Chr3	12601480	C-T	Homo	INTRON
SBS	Chr3	31498016	C-T	Homo	INTERGENIC
SBS	Chr3	35908308	T-C	Hetero	INTERGENIC
SBS	Chr4	14603063	C-T	Homo	INTERGENIC
SBS	Chr4	26058737	A-G	Hetero	INTERGENIC
SBS	Chr4	33711710	C-T	Homo	INTRON
SBS	Chr4	36278704	C-G	Homo	INTERGENIC
SBS	Chr5	17943603	T-C	Homo	INTERGENIC
SBS	Chr7	1120932	A-G	Hetero	INTERGENIC
SBS	Chr7	13448669	G-C,A	Hetero	INTERGENIC
SBS	Chr7	26181268	C-T	Homo	INTERGENIC
SBS	Chr9	7648068	G-C	Homo	INTRON
SBS	Chr9	13607751	A-G	Hetero	INTERGENIC
SBS	Chr9	18379042	C-T	Homo	INTERGENIC
SBS	Chr9	21590937	T-A	Homo	INTERGENIC
SBS	Chr10	9573888	C-T	Hetero	INTERGENIC
SBS	Chr10	11348288	G-T	Hetero	INTERGENIC
SBS	Chr10	22636709	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g187300
SBS	Chr11	1185295	A-G	Homo	INTERGENIC
SBS	Chr11	4528976	G-A	Hetero	INTRON
SBS	Chr11	11983259	T-C	Hetero	INTERGENIC
SBS	Chr11	18921565	G-T	Hetero	INTERGENIC
SBS	Chr12	5085556	G-A	Hetero	INTERGENIC
SBS	Chr12	19802091	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	911861	911863	2
Deletion	Chr9	2429329	2429331	2
Deletion	Chr5	6588001	6641000	52999	3
Deletion	Chr11	8581259	8581260	1
Deletion	Chr7	8683538	8683539	1
Deletion	Chr4	9480430	9480602	172
Deletion	Chr5	15681001	15694000	12999	OsKitaake05g120600
Deletion	Chr5	16824680	16824690	10
Deletion	Chr10	18166001	18184000	17999	2
Deletion	Chr4	23589001	23611000	21999	4
Deletion	Chr7	28438093	28438094	1
Deletion	Chr6	30822332	30822334	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17357266	17646727

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes