Search Kitaake

Mutant Information

Mutant Name	FN1262-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1262-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4640553 G-C Hetero INTERGENIC
SBS Chr1 4818740 A-G Hetero INTERGENIC
SBS Chr2 6792894 T-C Hetero INTERGENIC
SBS Chr2 11405040 G-T Hetero INTERGENIC
SBS Chr2 22283376 G-T Homo INTRON
SBS Chr3 26495263 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g276700
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr4 16936383 C-A Hetero INTERGENIC
SBS Chr4 17074556 A-G Hetero INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 30939185 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 4319512 G-T Hetero INTERGENIC
SBS Chr5 11569365 G-A Hetero INTERGENIC
SBS Chr6 5573902 G-T Hetero INTERGENIC
SBS Chr6 8349470 T-A Hetero INTERGENIC
SBS Chr6 9071763 C-A Hetero INTERGENIC
SBS Chr6 9872446 A-G Hetero INTERGENIC
SBS Chr6 14085916 A-C Hetero INTERGENIC
SBS Chr6 18103996 G-T Hetero INTERGENIC
SBS Chr7 902275 G-T Hetero INTERGENIC
SBS Chr7 15183770 C-T Hetero INTERGENIC
SBS Chr7 15183774 T-A Hetero INTERGENIC
SBS Chr8 23564056 T-A Homo INTERGENIC
SBS Chr8 24980741 C-T Hetero INTERGENIC
SBS Chr10 23634192 G-A Hetero INTERGENIC
SBS Chr12 14363628 T-A Homo INTERGENIC
SBS Chr12 14363646 T-C Homo INTERGENIC
SBS Chr12 18080372 A-C Homo INTERGENIC
SBS Chr12 20199307 A-C Homo INTERGENIC
SBS Chr12 26781851 T-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2767001 3231000 463999 76
Deletion Chr7 3221112 3221118 6
Deletion Chr10 12717055 12717060 5
Deletion Chr3 14505813 14505816 3 OsKitaake03g189000
Deletion Chr7 17616583 17616587 4
Deletion Chr4 19425001 19573000 147999 21
Deletion Chr6 19443288 19443291 3
Deletion Chr8 23132618 23132637 19
Deletion Chr8 25233334 25233343 9
Deletion Chr6 27536936 27536940 4
Deletion Chr7 29252636 29252637 1 OsKitaake07g280700
Deletion Chr3 37643799 37643807 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 13240544 13240547 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 26103864 27029587 OsKitaake01g262800
Inversion Chr1 26103883 27029597 OsKitaake01g262800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2996951 Chr7 6831714 OsKitaake10g024600
Translocation Chr10 2996963 Chr7 6833742 2
Translocation Chr12 5084122 Chr3 19275568

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4640553	G-C	Hetero	INTERGENIC
SBS	Chr1	4818740	A-G	Hetero	INTERGENIC
SBS	Chr2	6792894	T-C	Hetero	INTERGENIC
SBS	Chr2	11405040	G-T	Hetero	INTERGENIC
SBS	Chr2	22283376	G-T	Homo	INTRON
SBS	Chr3	26495263	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g276700
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr4	16936383	C-A	Hetero	INTERGENIC
SBS	Chr4	17074556	A-G	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	30939185	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	4319512	G-T	Hetero	INTERGENIC
SBS	Chr5	11569365	G-A	Hetero	INTERGENIC
SBS	Chr6	5573902	G-T	Hetero	INTERGENIC
SBS	Chr6	8349470	T-A	Hetero	INTERGENIC
SBS	Chr6	9071763	C-A	Hetero	INTERGENIC
SBS	Chr6	9872446	A-G	Hetero	INTERGENIC
SBS	Chr6	14085916	A-C	Hetero	INTERGENIC
SBS	Chr6	18103996	G-T	Hetero	INTERGENIC
SBS	Chr7	902275	G-T	Hetero	INTERGENIC
SBS	Chr7	15183770	C-T	Hetero	INTERGENIC
SBS	Chr7	15183774	T-A	Hetero	INTERGENIC
SBS	Chr8	23564056	T-A	Homo	INTERGENIC
SBS	Chr8	24980741	C-T	Hetero	INTERGENIC
SBS	Chr10	23634192	G-A	Hetero	INTERGENIC
SBS	Chr12	14363628	T-A	Homo	INTERGENIC
SBS	Chr12	14363646	T-C	Homo	INTERGENIC
SBS	Chr12	18080372	A-C	Homo	INTERGENIC
SBS	Chr12	20199307	A-C	Homo	INTERGENIC
SBS	Chr12	26781851	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2767001	3231000	463999	76
Deletion	Chr7	3221112	3221118	6
Deletion	Chr10	12717055	12717060	5
Deletion	Chr3	14505813	14505816	3	OsKitaake03g189000
Deletion	Chr7	17616583	17616587	4
Deletion	Chr4	19425001	19573000	147999	21
Deletion	Chr6	19443288	19443291	3
Deletion	Chr8	23132618	23132637	19
Deletion	Chr8	25233334	25233343	9
Deletion	Chr6	27536936	27536940	4
Deletion	Chr7	29252636	29252637	1	OsKitaake07g280700
Deletion	Chr3	37643799	37643807	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26103864	27029587	OsKitaake01g262800
Inversion	Chr1	26103883	27029597	OsKitaake01g262800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes