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Mutant Information

Mutant Name	FN1263-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1263-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8726192 A-T Homo INTERGENIC
SBS Chr1 31460137 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g315700
SBS Chr2 2689121 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g038700
SBS Chr2 12994868 C-T Hetero INTERGENIC
SBS Chr2 15661434 T-A,G Homo NON_SYNONYMOUS_CODING OsKitaake02g162100
SBS Chr2 25725973 G-A Hetero INTERGENIC
SBS Chr3 2070097 T-A Hetero INTERGENIC
SBS Chr3 2070099 G-T Hetero INTERGENIC
SBS Chr3 4830250 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 6157757 A-T Hetero INTRON
SBS Chr3 6157758 A-T Hetero INTRON
SBS Chr4 20975147 G-C Hetero INTERGENIC
SBS Chr4 28038838 G-T Hetero INTERGENIC
SBS Chr5 9428001 T-G Hetero INTERGENIC
SBS Chr5 13847386 A-G Hetero INTERGENIC
SBS Chr5 14568826 A-G Hetero INTERGENIC
SBS Chr5 23578198 A-G Hetero INTERGENIC
SBS Chr6 15710771 C-T Homo INTERGENIC
SBS Chr6 21588621 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g191000
SBS Chr6 29685396 C-A Hetero SYNONYMOUS_CODING
SBS Chr7 1014037 A-C Homo INTERGENIC
SBS Chr7 17133609 A-G Hetero INTERGENIC
SBS Chr7 19210805 G-A Hetero INTERGENIC
SBS Chr7 25061352 G-A Hetero INTERGENIC
SBS Chr8 2787161 A-G Homo INTRON
SBS Chr8 5270019 G-T Hetero INTERGENIC
SBS Chr8 27659277 A-T Hetero INTERGENIC
SBS Chr9 1927647 G-A Homo INTERGENIC
SBS Chr9 11544200 G-C Hetero INTERGENIC
SBS Chr9 14752126 T-A Hetero INTERGENIC
SBS Chr10 2367438 G-A Homo INTERGENIC
SBS Chr10 18140985 G-A Hetero INTERGENIC
SBS Chr10 19704812 C-T Hetero INTERGENIC
SBS Chr11 1618317 T-C Hetero INTRON
SBS Chr11 6443213 T-C Hetero INTERGENIC
SBS Chr11 23465230 G-T Homo INTERGENIC
SBS Chr11 24059361 G-A Homo INTRON
SBS Chr12 14410755 C-T Hetero INTERGENIC
SBS Chr12 15111182 C-T Hetero INTERGENIC
SBS Chr12 18899116 C-G Hetero INTERGENIC
SBS Chr12 20403724 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1039001 1071000 31999 4
Deletion Chr12 1803370 1803378 8 OsKitaake12g026900
Deletion Chr7 4981635 4981657 22
Deletion Chr7 5070565 5070572 7
Deletion Chr2 8500910 8500920 10
Deletion Chr9 8973001 9033000 59999 6
Deletion Chr6 11146404 11146413 9
Deletion Chr4 13563993 13564005 12
Deletion Chr5 19397444 19397445 1
Deletion Chr1 35019095 35019117 22 OsKitaake01g369400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 9223687 9223689 1 OsKitaake04g047400
Insertion Chr7 22163279 22163282 2
Insertion Chr8 23776240 23776243 2
Insertion Chr10 11331254 11331257 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1013920 1070758
Inversion Chr11 13071779 14007597
Inversion Chr11 13078524 13333510
Inversion Chr6 18302321 18317496 OsKitaake06g167800
Inversion Chr6 18302328 18307323 OsKitaake06g167800

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1070495 Chr1 22278199
Translocation Chr7 1070707 Chr6 18931687
Translocation Chr7 1070710 Chr1 22278189
Translocation Chr6 18931687 Chr1 22278199
Translocation Chr6 18931967 Chr1 22278188

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8726192	A-T	Homo	INTERGENIC
SBS	Chr1	31460137	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g315700
SBS	Chr2	2689121	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g038700
SBS	Chr2	12994868	C-T	Hetero	INTERGENIC
SBS	Chr2	15661434	T-A,G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g162100
SBS	Chr2	25725973	G-A	Hetero	INTERGENIC
SBS	Chr3	2070097	T-A	Hetero	INTERGENIC
SBS	Chr3	2070099	G-T	Hetero	INTERGENIC
SBS	Chr3	4830250	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	6157757	A-T	Hetero	INTRON
SBS	Chr3	6157758	A-T	Hetero	INTRON
SBS	Chr4	20975147	G-C	Hetero	INTERGENIC
SBS	Chr4	28038838	G-T	Hetero	INTERGENIC
SBS	Chr5	9428001	T-G	Hetero	INTERGENIC
SBS	Chr5	13847386	A-G	Hetero	INTERGENIC
SBS	Chr5	14568826	A-G	Hetero	INTERGENIC
SBS	Chr5	23578198	A-G	Hetero	INTERGENIC
SBS	Chr6	15710771	C-T	Homo	INTERGENIC
SBS	Chr6	21588621	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g191000
SBS	Chr6	29685396	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	1014037	A-C	Homo	INTERGENIC
SBS	Chr7	17133609	A-G	Hetero	INTERGENIC
SBS	Chr7	19210805	G-A	Hetero	INTERGENIC
SBS	Chr7	25061352	G-A	Hetero	INTERGENIC
SBS	Chr8	2787161	A-G	Homo	INTRON
SBS	Chr8	5270019	G-T	Hetero	INTERGENIC
SBS	Chr8	27659277	A-T	Hetero	INTERGENIC
SBS	Chr9	1927647	G-A	Homo	INTERGENIC
SBS	Chr9	11544200	G-C	Hetero	INTERGENIC
SBS	Chr9	14752126	T-A	Hetero	INTERGENIC
SBS	Chr10	2367438	G-A	Homo	INTERGENIC
SBS	Chr10	18140985	G-A	Hetero	INTERGENIC
SBS	Chr10	19704812	C-T	Hetero	INTERGENIC
SBS	Chr11	1618317	T-C	Hetero	INTRON
SBS	Chr11	6443213	T-C	Hetero	INTERGENIC
SBS	Chr11	23465230	G-T	Homo	INTERGENIC
SBS	Chr11	24059361	G-A	Homo	INTRON
SBS	Chr12	14410755	C-T	Hetero	INTERGENIC
SBS	Chr12	15111182	C-T	Hetero	INTERGENIC
SBS	Chr12	18899116	C-G	Hetero	INTERGENIC
SBS	Chr12	20403724	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1039001	1071000	31999	4
Deletion	Chr12	1803370	1803378	8	OsKitaake12g026900
Deletion	Chr7	4981635	4981657	22
Deletion	Chr7	5070565	5070572	7
Deletion	Chr2	8500910	8500920	10
Deletion	Chr9	8973001	9033000	59999	6
Deletion	Chr6	11146404	11146413	9
Deletion	Chr4	13563993	13564005	12
Deletion	Chr5	19397444	19397445	1
Deletion	Chr1	35019095	35019117	22	OsKitaake01g369400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1013920	1070758
Inversion	Chr11	13071779	14007597
Inversion	Chr11	13078524	13333510
Inversion	Chr6	18302321	18317496	OsKitaake06g167800
Inversion	Chr6	18302328	18307323	OsKitaake06g167800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes