Search Kitaake

Mutant Information

Mutant Name	FN1264-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1264-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 46536 A-G Hetero INTERGENIC
SBS Chr1 30695200 A-T Hetero INTERGENIC
SBS Chr1 39471610 G-T Homo INTERGENIC
SBS Chr1 39762978 G-A Hetero INTERGENIC
SBS Chr2 23043328 C-T Hetero INTRON
SBS Chr2 26972452 C-T Hetero INTERGENIC
SBS Chr2 29752177 G-A Hetero INTRON
SBS Chr2 33094909 C-T Hetero INTERGENIC
SBS Chr3 17488269 G-A Homo SYNONYMOUS_CODING
SBS Chr3 25430931 C-T Hetero INTERGENIC
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr3 36172278 T-A Hetero INTERGENIC
SBS Chr3 37695995 G-T Hetero INTERGENIC
SBS Chr4 85603 C-T Homo INTERGENIC
SBS Chr4 1152805 C-T Homo INTERGENIC
SBS Chr4 7268783 G-A Hetero INTERGENIC
SBS Chr5 9855394 C-T Homo INTERGENIC
SBS Chr5 9855395 T-A Homo INTERGENIC
SBS Chr6 10799393 A-C Homo NON_SYNONYMOUS_CODING OsKitaake06g120801
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 19578295 T-A Hetero INTERGENIC
SBS Chr6 26401085 A-G Hetero INTERGENIC
SBS Chr7 4652925 C-T Homo INTRON
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 12219224 C-T Homo INTERGENIC
SBS Chr8 3674534 C-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 3610125 G-T Hetero INTERGENIC
SBS Chr10 13558247 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g081700
SBS Chr11 6067509 C-T Homo INTERGENIC
SBS Chr11 15890037 A-C Hetero INTRON
SBS Chr12 22404539 G-A Hetero INTRON
SBS Chr12 23969270 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5417043 5417045 2
Deletion Chr5 12394221 12394224 3
Deletion Chr6 12602003 12602021 18 OsKitaake06g134600
Deletion Chr4 12694416 12694420 4
Deletion Chr9 17768710 17768713 3
Deletion Chr1 21964678 21964680 2
Deletion Chr3 22807637 22807646 9
Deletion Chr11 25343429 25343436 7
Deletion Chr2 26203275 26203276 1
Deletion Chr12 26513966 26513974 8 OsKitaake12g220100
Deletion Chr4 27178950 27178952 2
Deletion Chr11 27429001 27445000 15999 OsKitaake11g223600
Deletion Chr8 28208548 28208554 6
Deletion Chr1 39422332 39422333 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 2165605 2165609 3
Insertion Chr8 9073214 9073218 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14130201 14525178 2
Inversion Chr10 14130205 14525181 2
Inversion Chr5 22332437 23099015 2
Inversion Chr5 24989751 25142746
Inversion Chr11 26931538 26991710 OsKitaake11g219500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 8760722 Chr2 31020410
Translocation Chr8 9766004 Chr5 22332463 OsKitaake05g182700
Translocation Chr11 27192910 Chr2 31020403 OsKitaake11g222000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	46536	A-G	Hetero	INTERGENIC
SBS	Chr1	30695200	A-T	Hetero	INTERGENIC
SBS	Chr1	39471610	G-T	Homo	INTERGENIC
SBS	Chr1	39762978	G-A	Hetero	INTERGENIC
SBS	Chr2	23043328	C-T	Hetero	INTRON
SBS	Chr2	26972452	C-T	Hetero	INTERGENIC
SBS	Chr2	29752177	G-A	Hetero	INTRON
SBS	Chr2	33094909	C-T	Hetero	INTERGENIC
SBS	Chr3	17488269	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	25430931	C-T	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr3	36172278	T-A	Hetero	INTERGENIC
SBS	Chr3	37695995	G-T	Hetero	INTERGENIC
SBS	Chr4	85603	C-T	Homo	INTERGENIC
SBS	Chr4	1152805	C-T	Homo	INTERGENIC
SBS	Chr4	7268783	G-A	Hetero	INTERGENIC
SBS	Chr5	9855394	C-T	Homo	INTERGENIC
SBS	Chr5	9855395	T-A	Homo	INTERGENIC
SBS	Chr6	10799393	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g120801
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	19578295	T-A	Hetero	INTERGENIC
SBS	Chr6	26401085	A-G	Hetero	INTERGENIC
SBS	Chr7	4652925	C-T	Homo	INTRON
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	12219224	C-T	Homo	INTERGENIC
SBS	Chr8	3674534	C-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	3610125	G-T	Hetero	INTERGENIC
SBS	Chr10	13558247	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g081700
SBS	Chr11	6067509	C-T	Homo	INTERGENIC
SBS	Chr11	15890037	A-C	Hetero	INTRON
SBS	Chr12	22404539	G-A	Hetero	INTRON
SBS	Chr12	23969270	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5417043	5417045	2
Deletion	Chr5	12394221	12394224	3
Deletion	Chr6	12602003	12602021	18	OsKitaake06g134600
Deletion	Chr4	12694416	12694420	4
Deletion	Chr9	17768710	17768713	3
Deletion	Chr1	21964678	21964680	2
Deletion	Chr3	22807637	22807646	9
Deletion	Chr11	25343429	25343436	7
Deletion	Chr2	26203275	26203276	1
Deletion	Chr12	26513966	26513974	8	OsKitaake12g220100
Deletion	Chr4	27178950	27178952	2
Deletion	Chr11	27429001	27445000	15999	OsKitaake11g223600
Deletion	Chr8	28208548	28208554	6
Deletion	Chr1	39422332	39422333	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14130201	14525178	2
Inversion	Chr10	14130205	14525181	2
Inversion	Chr5	22332437	23099015	2
Inversion	Chr5	24989751	25142746
Inversion	Chr11	26931538	26991710	OsKitaake11g219500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes