Search Kitaake

Mutant Information

Mutant Name	FN1265-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1265-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10059234 C-T Hetero INTRON
SBS Chr1 21641662 A-T Hetero INTERGENIC
SBS Chr1 28727398 A-G Hetero UTR_3_PRIME
SBS Chr1 30819277 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 35166905 T-G Hetero INTRON
SBS Chr2 8885253 G-A Hetero INTERGENIC
SBS Chr2 14510107 T-C Hetero INTERGENIC
SBS Chr2 18167095 A-C Hetero INTERGENIC
SBS Chr2 20907138 G-A Homo INTERGENIC
SBS Chr2 33017888 C-T Hetero INTERGENIC
SBS Chr2 34338741 T-G Hetero INTERGENIC
SBS Chr5 1957626 T-G Hetero INTERGENIC
SBS Chr5 23963157 T-C Hetero INTERGENIC
SBS Chr5 24527918 G-A Hetero INTERGENIC
SBS Chr5 26958157 T-C Hetero INTRON
SBS Chr5 27803263 C-A Hetero INTERGENIC
SBS Chr6 3383757 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g047500
SBS Chr6 3402620 A-T Homo INTRON
SBS Chr6 23487168 G-T Hetero INTERGENIC
SBS Chr6 28329408 G-C Hetero INTERGENIC
SBS Chr7 4324588 C-T Hetero INTERGENIC
SBS Chr7 27535400 A-T Homo INTERGENIC
SBS Chr8 4579335 A-G Homo SYNONYMOUS_CODING
SBS Chr8 6721692 G-T Hetero INTERGENIC
SBS Chr8 20867089 C-G Hetero INTRON
SBS Chr9 8717370 G-T Homo INTRON
SBS Chr9 13016908 G-T Homo INTERGENIC
SBS Chr9 15851872 C-T Hetero INTERGENIC
SBS Chr11 4485848 G-T Hetero INTERGENIC
SBS Chr11 15609774 G-A Homo INTRON
SBS Chr12 19853074 C-T Hetero INTERGENIC
SBS Chr12 23594115 A-G Hetero UTR_5_PRIME

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2815340 2815344 4
Deletion Chr12 3376003 3376021 18
Deletion Chr4 7916443 7916447 4
Deletion Chr10 9841610 9841612 2
Deletion Chr2 13997001 14097000 99999 8
Deletion Chr11 18226193 18226195 2
Deletion Chr2 19532031 19532039 8
Deletion Chr2 26004914 26004921 7
Deletion Chr1 39798164 39798167 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17328639 17328643 3
Insertion Chr6 17254537 17254541 3
Insertion Chr11 17083238 17083242 3
Insertion Chr11 24004168 24004170 1 OsKitaake11g193000

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 9749697 10550665
Inversion Chr2 13993964 14321510

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1890207 Chr4 23322624
Translocation Chr6 3385075 Chr4 23322450 OsKitaake06g047500
Translocation Chr8 5012672 Chr4 3828559
Translocation Chr2 22384170 Chr1 10166358 OsKitaake01g128000
Translocation Chr3 25388429 Chr1 10166360 2
Translocation Chr3 25394024 Chr1 10166359 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10059234	C-T	Hetero	INTRON
SBS	Chr1	21641662	A-T	Hetero	INTERGENIC
SBS	Chr1	28727398	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	30819277	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	35166905	T-G	Hetero	INTRON
SBS	Chr2	8885253	G-A	Hetero	INTERGENIC
SBS	Chr2	14510107	T-C	Hetero	INTERGENIC
SBS	Chr2	18167095	A-C	Hetero	INTERGENIC
SBS	Chr2	20907138	G-A	Homo	INTERGENIC
SBS	Chr2	33017888	C-T	Hetero	INTERGENIC
SBS	Chr2	34338741	T-G	Hetero	INTERGENIC
SBS	Chr5	1957626	T-G	Hetero	INTERGENIC
SBS	Chr5	23963157	T-C	Hetero	INTERGENIC
SBS	Chr5	24527918	G-A	Hetero	INTERGENIC
SBS	Chr5	26958157	T-C	Hetero	INTRON
SBS	Chr5	27803263	C-A	Hetero	INTERGENIC
SBS	Chr6	3383757	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g047500
SBS	Chr6	3402620	A-T	Homo	INTRON
SBS	Chr6	23487168	G-T	Hetero	INTERGENIC
SBS	Chr6	28329408	G-C	Hetero	INTERGENIC
SBS	Chr7	4324588	C-T	Hetero	INTERGENIC
SBS	Chr7	27535400	A-T	Homo	INTERGENIC
SBS	Chr8	4579335	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr8	6721692	G-T	Hetero	INTERGENIC
SBS	Chr8	20867089	C-G	Hetero	INTRON
SBS	Chr9	8717370	G-T	Homo	INTRON
SBS	Chr9	13016908	G-T	Homo	INTERGENIC
SBS	Chr9	15851872	C-T	Hetero	INTERGENIC
SBS	Chr11	4485848	G-T	Hetero	INTERGENIC
SBS	Chr11	15609774	G-A	Homo	INTRON
SBS	Chr12	19853074	C-T	Hetero	INTERGENIC
SBS	Chr12	23594115	A-G	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2815340	2815344	4
Deletion	Chr12	3376003	3376021	18
Deletion	Chr4	7916443	7916447	4
Deletion	Chr10	9841610	9841612	2
Deletion	Chr2	13997001	14097000	99999	8
Deletion	Chr11	18226193	18226195	2
Deletion	Chr2	19532031	19532039	8
Deletion	Chr2	26004914	26004921	7
Deletion	Chr1	39798164	39798167	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9749697	10550665
Inversion	Chr2	13993964	14321510

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes