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Mutant Information

Mutant Name	FN1266-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1266-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4870630 G-A Hetero INTERGENIC
SBS Chr1 25951753 T-G Homo INTRON
SBS Chr1 28070765 T-C Homo INTERGENIC
SBS Chr1 28070768 C-T Homo INTERGENIC
SBS Chr2 21909864 T-C Homo INTERGENIC
SBS Chr2 23486210 C-A Hetero INTERGENIC
SBS Chr3 5949162 T-C Homo INTERGENIC
SBS Chr3 5949167 T-C Homo INTERGENIC
SBS Chr3 5949175 A-T Homo INTERGENIC
SBS Chr4 10099099 G-C Hetero INTERGENIC
SBS Chr6 11509182 G-A Homo INTERGENIC
SBS Chr7 23508769 C-A Hetero INTRON
SBS Chr7 27704157 G-C Hetero INTERGENIC
SBS Chr8 9027331 A-T Hetero INTERGENIC
SBS Chr8 10263816 T-A Hetero INTERGENIC
SBS Chr8 18226210 T-G Homo INTERGENIC
SBS Chr8 21924150 A-T Hetero INTERGENIC
SBS Chr10 7817522 G-A Homo INTERGENIC
SBS Chr10 12375697 C-T Homo INTERGENIC
SBS Chr10 15246735 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g097000
SBS Chr11 15964275 T-G Hetero UTR_5_PRIME
SBS Chr11 21278681 C-T Hetero INTERGENIC
SBS Chr12 3507426 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 742485 742486 1
Deletion Chr2 3291177 3291178 1
Deletion Chr6 4970642 4970646 4 OsKitaake06g066800
Deletion Chr11 6905896 6905897 1 OsKitaake11g079910
Deletion Chr12 11150799 11150807 8
Deletion Chr10 16240633 16240634 1
Deletion Chr4 19980618 19980627 9
Deletion Chr2 21322049 21322050 1
Deletion Chr11 22641001 22659000 17999 11
Deletion Chr11 23513001 23772000 258999 22
Deletion Chr11 23779001 23786000 6999 2
Deletion Chr11 27184541 27184543 2
Deletion Chr4 28102802 28102803 1
Deletion Chr1 36441723 36441724 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 24469783 24469791 7
Insertion Chr11 13459725 13459728 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 21774025 21909924
Inversion Chr2 21909964 22104085
Inversion Chr2 28070778 28864577 OsKitaake02g283000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21430843 Chr2 28070781 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4870630	G-A	Hetero	INTERGENIC
SBS	Chr1	25951753	T-G	Homo	INTRON
SBS	Chr1	28070765	T-C	Homo	INTERGENIC
SBS	Chr1	28070768	C-T	Homo	INTERGENIC
SBS	Chr2	21909864	T-C	Homo	INTERGENIC
SBS	Chr2	23486210	C-A	Hetero	INTERGENIC
SBS	Chr3	5949162	T-C	Homo	INTERGENIC
SBS	Chr3	5949167	T-C	Homo	INTERGENIC
SBS	Chr3	5949175	A-T	Homo	INTERGENIC
SBS	Chr4	10099099	G-C	Hetero	INTERGENIC
SBS	Chr6	11509182	G-A	Homo	INTERGENIC
SBS	Chr7	23508769	C-A	Hetero	INTRON
SBS	Chr7	27704157	G-C	Hetero	INTERGENIC
SBS	Chr8	9027331	A-T	Hetero	INTERGENIC
SBS	Chr8	10263816	T-A	Hetero	INTERGENIC
SBS	Chr8	18226210	T-G	Homo	INTERGENIC
SBS	Chr8	21924150	A-T	Hetero	INTERGENIC
SBS	Chr10	7817522	G-A	Homo	INTERGENIC
SBS	Chr10	12375697	C-T	Homo	INTERGENIC
SBS	Chr10	15246735	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g097000
SBS	Chr11	15964275	T-G	Hetero	UTR_5_PRIME
SBS	Chr11	21278681	C-T	Hetero	INTERGENIC
SBS	Chr12	3507426	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	742485	742486	1
Deletion	Chr2	3291177	3291178	1
Deletion	Chr6	4970642	4970646	4	OsKitaake06g066800
Deletion	Chr11	6905896	6905897	1	OsKitaake11g079910
Deletion	Chr12	11150799	11150807	8
Deletion	Chr10	16240633	16240634	1
Deletion	Chr4	19980618	19980627	9
Deletion	Chr2	21322049	21322050	1
Deletion	Chr11	22641001	22659000	17999	11
Deletion	Chr11	23513001	23772000	258999	22
Deletion	Chr11	23779001	23786000	6999	2
Deletion	Chr11	27184541	27184543	2
Deletion	Chr4	28102802	28102803	1
Deletion	Chr1	36441723	36441724	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21774025	21909924
Inversion	Chr2	21909964	22104085
Inversion	Chr2	28070778	28864577	OsKitaake02g283000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes