Search Kitaake

Mutant Information

Mutant Name	FN1268-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1268-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3508415 G-T Hetero INTERGENIC
SBS Chr1 15735228 T-C Hetero INTERGENIC
SBS Chr2 2477378 C-T Hetero INTERGENIC
SBS Chr2 21579269 C-A Homo INTRON
SBS Chr2 24888650 T-C Homo INTERGENIC
SBS Chr2 33973451 A-C Homo INTERGENIC
SBS Chr2 34071989 C-A Hetero INTERGENIC
SBS Chr2 34071991 G-A Hetero INTERGENIC
SBS Chr3 3666398 T-A Homo INTRON
SBS Chr3 27343772 C-A Homo INTERGENIC
SBS Chr4 21261985 A-T Hetero INTERGENIC
SBS Chr4 24361681 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g157900
SBS Chr4 24714400 T-G Hetero INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 7808804 A-T Hetero INTERGENIC
SBS Chr5 13555431 C-T Hetero INTRON
SBS Chr5 26717693 A-G Hetero UTR_5_PRIME
SBS Chr6 1533547 C-A Homo INTRON
SBS Chr6 1533548 A-T Homo INTRON
SBS Chr6 8500291 C-T Hetero INTERGENIC
SBS Chr6 9629180 C-T Hetero INTERGENIC
SBS Chr6 14695358 C-G Hetero INTRON
SBS Chr7 5373072 G-T Hetero INTERGENIC
SBS Chr7 8260307 C-A Hetero INTRON
SBS Chr7 16245396 C-T Hetero INTERGENIC
SBS Chr8 4758875 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g054100
SBS Chr8 11128791 C-G Hetero INTERGENIC
SBS Chr8 13429637 T-G Hetero INTRON
SBS Chr8 14461915 T-A Homo INTERGENIC
SBS Chr8 21999676 C-A Homo INTRON
SBS Chr8 24481556 A-G Homo INTERGENIC
SBS Chr9 5519098 C-T Homo INTERGENIC
SBS Chr9 10788990 C-G Hetero INTRON
SBS Chr10 8872269 C-G Hetero INTERGENIC
SBS Chr11 24493755 T-G Homo INTERGENIC
SBS Chr11 26818730 T-G Hetero INTERGENIC
SBS Chr11 29333099 A-T Hetero INTERGENIC
SBS Chr12 3216655 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g045900
SBS Chr12 13606688 C-G Hetero INTERGENIC
SBS Chr12 24928172 G-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 7875257 7875262 5
Deletion Chr10 16393376 16393388 12 OsKitaake10g111100
Deletion Chr12 18339424 18339534 110
Deletion Chr12 18698413 18698414 1
Deletion Chr1 21384119 21384120 1
Deletion Chr2 22074356 22074360 4
Deletion Chr8 28506548 28506550 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 19828679 19828682 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4243354 Chr7 11347530
Translocation Chr8 4824994 Chr7 11347491

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3508415	G-T	Hetero	INTERGENIC
SBS	Chr1	15735228	T-C	Hetero	INTERGENIC
SBS	Chr2	2477378	C-T	Hetero	INTERGENIC
SBS	Chr2	21579269	C-A	Homo	INTRON
SBS	Chr2	24888650	T-C	Homo	INTERGENIC
SBS	Chr2	33973451	A-C	Homo	INTERGENIC
SBS	Chr2	34071989	C-A	Hetero	INTERGENIC
SBS	Chr2	34071991	G-A	Hetero	INTERGENIC
SBS	Chr3	3666398	T-A	Homo	INTRON
SBS	Chr3	27343772	C-A	Homo	INTERGENIC
SBS	Chr4	21261985	A-T	Hetero	INTERGENIC
SBS	Chr4	24361681	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g157900
SBS	Chr4	24714400	T-G	Hetero	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	7808804	A-T	Hetero	INTERGENIC
SBS	Chr5	13555431	C-T	Hetero	INTRON
SBS	Chr5	26717693	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	1533547	C-A	Homo	INTRON
SBS	Chr6	1533548	A-T	Homo	INTRON
SBS	Chr6	8500291	C-T	Hetero	INTERGENIC
SBS	Chr6	9629180	C-T	Hetero	INTERGENIC
SBS	Chr6	14695358	C-G	Hetero	INTRON
SBS	Chr7	5373072	G-T	Hetero	INTERGENIC
SBS	Chr7	8260307	C-A	Hetero	INTRON
SBS	Chr7	16245396	C-T	Hetero	INTERGENIC
SBS	Chr8	4758875	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g054100
SBS	Chr8	11128791	C-G	Hetero	INTERGENIC
SBS	Chr8	13429637	T-G	Hetero	INTRON
SBS	Chr8	14461915	T-A	Homo	INTERGENIC
SBS	Chr8	21999676	C-A	Homo	INTRON
SBS	Chr8	24481556	A-G	Homo	INTERGENIC
SBS	Chr9	5519098	C-T	Homo	INTERGENIC
SBS	Chr9	10788990	C-G	Hetero	INTRON
SBS	Chr10	8872269	C-G	Hetero	INTERGENIC
SBS	Chr11	24493755	T-G	Homo	INTERGENIC
SBS	Chr11	26818730	T-G	Hetero	INTERGENIC
SBS	Chr11	29333099	A-T	Hetero	INTERGENIC
SBS	Chr12	3216655	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g045900
SBS	Chr12	13606688	C-G	Hetero	INTERGENIC
SBS	Chr12	24928172	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	7875257	7875262	5
Deletion	Chr10	16393376	16393388	12	OsKitaake10g111100
Deletion	Chr12	18339424	18339534	110
Deletion	Chr12	18698413	18698414	1
Deletion	Chr1	21384119	21384120	1
Deletion	Chr2	22074356	22074360	4
Deletion	Chr8	28506548	28506550	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4243354	Chr7	11347530
Translocation	Chr8	4824994	Chr7	11347491

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes