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Mutant Information

Mutant Name	FN1270-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1270-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17453188 G-T Hetero INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr3 22926505 A-T Homo INTERGENIC
SBS Chr3 25006445 C-T Homo INTERGENIC
SBS Chr3 25327131 C-T Homo INTERGENIC
SBS Chr3 25361244 G-A Homo INTERGENIC
SBS Chr4 15470809 C-A Hetero INTERGENIC
SBS Chr4 17172413 T-C Homo INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 10347669 A-T Hetero INTERGENIC
SBS Chr5 11325572 A-T Hetero INTERGENIC
SBS Chr5 15715658 T-C Hetero INTERGENIC
SBS Chr6 14916046 C-T Hetero INTERGENIC
SBS Chr6 16029086 C-T Hetero INTERGENIC
SBS Chr6 17833760 G-A Hetero INTERGENIC
SBS Chr6 19516984 G-T Hetero INTERGENIC
SBS Chr7 14707611 C-A Homo INTERGENIC
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr7 25002096 C-A Homo INTERGENIC
SBS Chr8 5763626 G-T Homo INTERGENIC
SBS Chr8 9527595 C-G Hetero INTERGENIC
SBS Chr8 14620074 A-G Homo INTERGENIC
SBS Chr8 18752764 G-A Homo INTERGENIC
SBS Chr9 4175776 C-A Homo INTERGENIC
SBS Chr9 11364188 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g070400
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 9012662 A-G Hetero INTERGENIC
SBS Chr11 15885191 C-T Hetero INTRON
SBS Chr11 19255752 G-A Hetero INTERGENIC
SBS Chr11 28058406 C-T Hetero INTERGENIC
SBS Chr12 351908 G-T Hetero UTR_5_PRIME
SBS Chr12 5392137 G-A Homo INTERGENIC
SBS Chr12 12040430 G-A Homo INTERGENIC
SBS Chr12 12994165 G-A Hetero INTERGENIC
SBS Chr12 18952468 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6515104 6515116 12
Deletion Chr12 9876659 9876805 146
Deletion Chr8 10694182 10694183 1
Deletion Chr12 11652227 11652538 311
Deletion Chr5 14000001 14022000 21999
Deletion Chr5 14658001 14667000 8999 2
Deletion Chr5 15447051 15447059 8
Deletion Chr1 19683995 19684002 7 OsKitaake01g196000
Deletion Chr8 20250305 20250311 6 OsKitaake08g149100
Deletion Chr3 25006461 25006462 1
Deletion Chr11 27640885 27640995 110
Deletion Chr8 28366834 28366839 5
Deletion Chr1 38357836 38357838 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24574176 24574186 9
Insertion Chr5 2161179 2161182 2
Insertion Chr8 469848 469851 2
Insertion Chr11 17269472 17269475 2
Insertion Chr11 21806578 21806581 2
Insertion Chr12 19669483 19669486 2
Insertion Chr12 21597225 21597228 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14325299 14333257
Inversion Chr12 14325301 14333258

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14158861 Chr8 24449833 OsKitaake08g189300
Translocation Chr11 14159450 Chr8 24449838 OsKitaake08g189300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17453188	G-T	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr3	22926505	A-T	Homo	INTERGENIC
SBS	Chr3	25006445	C-T	Homo	INTERGENIC
SBS	Chr3	25327131	C-T	Homo	INTERGENIC
SBS	Chr3	25361244	G-A	Homo	INTERGENIC
SBS	Chr4	15470809	C-A	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Homo	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	10347669	A-T	Hetero	INTERGENIC
SBS	Chr5	11325572	A-T	Hetero	INTERGENIC
SBS	Chr5	15715658	T-C	Hetero	INTERGENIC
SBS	Chr6	14916046	C-T	Hetero	INTERGENIC
SBS	Chr6	16029086	C-T	Hetero	INTERGENIC
SBS	Chr6	17833760	G-A	Hetero	INTERGENIC
SBS	Chr6	19516984	G-T	Hetero	INTERGENIC
SBS	Chr7	14707611	C-A	Homo	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr8	5763626	G-T	Homo	INTERGENIC
SBS	Chr8	9527595	C-G	Hetero	INTERGENIC
SBS	Chr8	14620074	A-G	Homo	INTERGENIC
SBS	Chr8	18752764	G-A	Homo	INTERGENIC
SBS	Chr9	4175776	C-A	Homo	INTERGENIC
SBS	Chr9	11364188	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g070400
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	9012662	A-G	Hetero	INTERGENIC
SBS	Chr11	15885191	C-T	Hetero	INTRON
SBS	Chr11	19255752	G-A	Hetero	INTERGENIC
SBS	Chr11	28058406	C-T	Hetero	INTERGENIC
SBS	Chr12	351908	G-T	Hetero	UTR_5_PRIME
SBS	Chr12	5392137	G-A	Homo	INTERGENIC
SBS	Chr12	12040430	G-A	Homo	INTERGENIC
SBS	Chr12	12994165	G-A	Hetero	INTERGENIC
SBS	Chr12	18952468	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6515104	6515116	12
Deletion	Chr12	9876659	9876805	146
Deletion	Chr8	10694182	10694183	1
Deletion	Chr12	11652227	11652538	311
Deletion	Chr5	14000001	14022000	21999
Deletion	Chr5	14658001	14667000	8999	2
Deletion	Chr5	15447051	15447059	8
Deletion	Chr1	19683995	19684002	7	OsKitaake01g196000
Deletion	Chr8	20250305	20250311	6	OsKitaake08g149100
Deletion	Chr3	25006461	25006462	1
Deletion	Chr11	27640885	27640995	110
Deletion	Chr8	28366834	28366839	5
Deletion	Chr1	38357836	38357838	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14325299	14333257
Inversion	Chr12	14325301	14333258

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes