Search Kitaake

Mutant Information

Mutant Name	FN1271-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1271-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21340702 G-T Hetero INTERGENIC
SBS Chr1 39956228 G-A Hetero INTERGENIC
SBS Chr2 14217193 T-C Hetero INTERGENIC
SBS Chr2 22621451 T-A Hetero INTERGENIC
SBS Chr2 24910564 C-G Hetero INTERGENIC
SBS Chr2 28285316 G-A Hetero INTERGENIC
SBS Chr3 8782010 C-T Hetero INTERGENIC
SBS Chr3 18498321 T-A Hetero INTRON
SBS Chr3 23889972 G-A Hetero STOP_GAINED OsKitaake03g256300
SBS Chr3 30724873 C-T Hetero INTERGENIC
SBS Chr3 33926514 A-G Homo UTR_3_PRIME
SBS Chr3 35077961 C-A Homo INTERGENIC
SBS Chr4 1248189 G-A Homo INTRON
SBS Chr4 10202301 C-T Hetero INTERGENIC
SBS Chr4 15443980 C-T Hetero INTERGENIC
SBS Chr4 23832420 C-T Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 16856001 C-T Homo INTERGENIC
SBS Chr6 5705638 G-A Hetero INTERGENIC
SBS Chr10 13447332 C-T Hetero INTERGENIC
SBS Chr10 20552307 T-C Homo INTERGENIC
SBS Chr11 20194764 A-C Homo INTERGENIC
SBS Chr11 23489777 A-T Homo INTERGENIC
SBS Chr11 29300275 A-G Hetero INTERGENIC
SBS Chr12 5020242 A-C Hetero INTERGENIC
SBS Chr12 10503989 G-A Homo INTERGENIC
SBS Chr12 11029523 T-C Homo INTERGENIC
SBS Chr12 22943139 T-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1262001 1291000 28999 8
Deletion Chr4 1282234 1282236 2
Deletion Chr3 1965897 1965898 1
Deletion Chr5 8576035 8576036 1
Deletion Chr1 17242104 17242106 2
Deletion Chr5 17756160 17756168 8
Deletion Chr8 21316001 21369000 52999 4
Deletion Chr7 21905889 21905891 2
Deletion Chr1 28161189 28161527 338

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 6704235 6704237 1 OsKitaake06g087550
Insertion Chr10 20239395 20239398 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 21256457 21256851 OsKitaake06g188300
Inversion Chr8 25142661 25496258
Inversion Chr8 25142686 25496265

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21340702	G-T	Hetero	INTERGENIC
SBS	Chr1	39956228	G-A	Hetero	INTERGENIC
SBS	Chr2	14217193	T-C	Hetero	INTERGENIC
SBS	Chr2	22621451	T-A	Hetero	INTERGENIC
SBS	Chr2	24910564	C-G	Hetero	INTERGENIC
SBS	Chr2	28285316	G-A	Hetero	INTERGENIC
SBS	Chr3	8782010	C-T	Hetero	INTERGENIC
SBS	Chr3	18498321	T-A	Hetero	INTRON
SBS	Chr3	23889972	G-A	Hetero	STOP_GAINED	OsKitaake03g256300
SBS	Chr3	30724873	C-T	Hetero	INTERGENIC
SBS	Chr3	33926514	A-G	Homo	UTR_3_PRIME
SBS	Chr3	35077961	C-A	Homo	INTERGENIC
SBS	Chr4	1248189	G-A	Homo	INTRON
SBS	Chr4	10202301	C-T	Hetero	INTERGENIC
SBS	Chr4	15443980	C-T	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	16856001	C-T	Homo	INTERGENIC
SBS	Chr6	5705638	G-A	Hetero	INTERGENIC
SBS	Chr10	13447332	C-T	Hetero	INTERGENIC
SBS	Chr10	20552307	T-C	Homo	INTERGENIC
SBS	Chr11	20194764	A-C	Homo	INTERGENIC
SBS	Chr11	23489777	A-T	Homo	INTERGENIC
SBS	Chr11	29300275	A-G	Hetero	INTERGENIC
SBS	Chr12	5020242	A-C	Hetero	INTERGENIC
SBS	Chr12	10503989	G-A	Homo	INTERGENIC
SBS	Chr12	11029523	T-C	Homo	INTERGENIC
SBS	Chr12	22943139	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1262001	1291000	28999	8
Deletion	Chr4	1282234	1282236	2
Deletion	Chr3	1965897	1965898	1
Deletion	Chr5	8576035	8576036	1
Deletion	Chr1	17242104	17242106	2
Deletion	Chr5	17756160	17756168	8
Deletion	Chr8	21316001	21369000	52999	4
Deletion	Chr7	21905889	21905891	2
Deletion	Chr1	28161189	28161527	338

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	21256457	21256851	OsKitaake06g188300
Inversion	Chr8	25142661	25496258
Inversion	Chr8	25142686	25496265

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes