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Mutant Information

Mutant Name	FN1272-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1272-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8336337 A-T Hetero INTERGENIC
SBS Chr1 11511182 G-A Hetero INTERGENIC
SBS Chr1 25905406 A-T Homo INTERGENIC
SBS Chr1 27599193 C-A Homo INTERGENIC
SBS Chr1 28455407 C-T Homo SPLICE_SITE_REGION
SBS Chr2 134400 C-T Hetero INTRON
SBS Chr2 14052448 T-C Hetero INTERGENIC
SBS Chr3 19118878 G-A Hetero INTERGENIC
SBS Chr3 29051696 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g301700
SBS Chr3 29410783 C-A Hetero SYNONYMOUS_CODING
SBS Chr4 6019480 G-A Hetero INTERGENIC
SBS Chr4 6775564 C-A Hetero INTERGENIC
SBS Chr4 11035788 G-A Hetero INTERGENIC
SBS Chr4 28889395 G-C Hetero INTERGENIC
SBS Chr4 35099154 C-T Homo INTRON
SBS Chr5 11779250 G-A Homo INTERGENIC
SBS Chr5 27152188 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 8812738 G-C Hetero INTERGENIC
SBS Chr6 11033857 G-A Hetero INTERGENIC
SBS Chr6 14224285 C-T Hetero INTERGENIC
SBS Chr6 26441564 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g237500
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 10143570 G-T Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 23057711 G-A Hetero INTERGENIC
SBS Chr7 27252933 C-T Hetero INTERGENIC
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr9 4320904 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g023400
SBS Chr9 7673230 T-A Hetero INTERGENIC
SBS Chr9 17733239 C-G Hetero INTERGENIC
SBS Chr10 1711230 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g012000
SBS Chr11 1193935 G-A Hetero INTERGENIC
SBS Chr11 1427967 T-G Hetero INTERGENIC
SBS Chr11 7677133 T-A Homo INTERGENIC
SBS Chr11 13589979 A-G Homo INTERGENIC
SBS Chr12 9256431 A-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2438974 2438982 8
Deletion Chr6 3076388 3076392 4
Deletion Chr10 3613864 3613865 1 OsKitaake10g027000
Deletion Chr10 7181442 7181450 8
Deletion Chr8 8302555 8302556 1
Deletion Chr6 8329001 8338000 8999 OsKitaake06g104500
Deletion Chr5 13318626 13318629 3
Deletion Chr10 14229270 14229282 12
Deletion Chr5 15412546 15412548 2
Deletion Chr1 17388106 17388108 2
Deletion Chr11 22449055 22449063 8 OsKitaake11g178400
Deletion Chr1 23512613 23512621 8
Deletion Chr1 29071395 29071405 10
Deletion Chr5 29918464 29918465 1
Deletion Chr3 30090316 30090322 6 OsKitaake03g315200
Deletion Chr4 33352001 33422000 69999 12
Deletion Chr4 33462001 33494000 31999 4
Deletion Chr4 33957001 34005000 47999 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 24544310 24544313 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 8191751 8328944 OsKitaake06g103300
Inversion Chr6 8337953 8974111 OsKitaake06g108200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20182850 Chr4 34004576 OsKitaake04g283700
Translocation Chr11 20182858 Chr4 34004699 OsKitaake04g283700
Translocation Chr7 23724297 Chr6 8981884 OsKitaake07g208400
Translocation Chr7 23724307 Chr6 8981670 OsKitaake07g208400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8336337	A-T	Hetero	INTERGENIC
SBS	Chr1	11511182	G-A	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Homo	INTERGENIC
SBS	Chr1	27599193	C-A	Homo	INTERGENIC
SBS	Chr1	28455407	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr2	134400	C-T	Hetero	INTRON
SBS	Chr2	14052448	T-C	Hetero	INTERGENIC
SBS	Chr3	19118878	G-A	Hetero	INTERGENIC
SBS	Chr3	29051696	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g301700
SBS	Chr3	29410783	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	6019480	G-A	Hetero	INTERGENIC
SBS	Chr4	6775564	C-A	Hetero	INTERGENIC
SBS	Chr4	11035788	G-A	Hetero	INTERGENIC
SBS	Chr4	28889395	G-C	Hetero	INTERGENIC
SBS	Chr4	35099154	C-T	Homo	INTRON
SBS	Chr5	11779250	G-A	Homo	INTERGENIC
SBS	Chr5	27152188	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	8812738	G-C	Hetero	INTERGENIC
SBS	Chr6	11033857	G-A	Hetero	INTERGENIC
SBS	Chr6	14224285	C-T	Hetero	INTERGENIC
SBS	Chr6	26441564	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g237500
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	10143570	G-T	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	23057711	G-A	Hetero	INTERGENIC
SBS	Chr7	27252933	C-T	Hetero	INTERGENIC
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr9	4320904	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g023400
SBS	Chr9	7673230	T-A	Hetero	INTERGENIC
SBS	Chr9	17733239	C-G	Hetero	INTERGENIC
SBS	Chr10	1711230	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g012000
SBS	Chr11	1193935	G-A	Hetero	INTERGENIC
SBS	Chr11	1427967	T-G	Hetero	INTERGENIC
SBS	Chr11	7677133	T-A	Homo	INTERGENIC
SBS	Chr11	13589979	A-G	Homo	INTERGENIC
SBS	Chr12	9256431	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2438974	2438982	8
Deletion	Chr6	3076388	3076392	4
Deletion	Chr10	3613864	3613865	1	OsKitaake10g027000
Deletion	Chr10	7181442	7181450	8
Deletion	Chr8	8302555	8302556	1
Deletion	Chr6	8329001	8338000	8999	OsKitaake06g104500
Deletion	Chr5	13318626	13318629	3
Deletion	Chr10	14229270	14229282	12
Deletion	Chr5	15412546	15412548	2
Deletion	Chr1	17388106	17388108	2
Deletion	Chr11	22449055	22449063	8	OsKitaake11g178400
Deletion	Chr1	23512613	23512621	8
Deletion	Chr1	29071395	29071405	10
Deletion	Chr5	29918464	29918465	1
Deletion	Chr3	30090316	30090322	6	OsKitaake03g315200
Deletion	Chr4	33352001	33422000	69999	12
Deletion	Chr4	33462001	33494000	31999	4
Deletion	Chr4	33957001	34005000	47999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8191751	8328944	OsKitaake06g103300
Inversion	Chr6	8337953	8974111	OsKitaake06g108200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes