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| Mutant Information |
|---|
| Mutant Name | FN1273-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1273-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5068169 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16299872 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 17151836 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35531991 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1571629 | T-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr2 | 2809083 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13953189 | C-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 15793713 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19290319 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 29352385 | G-C | Hetero | STOP_GAINED | OsKitaake03g306100 |
| SBS | Chr3 | 33789633 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3292142 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10258765 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21979110 | C-T | Homo | INTRON | |
| SBS | Chr5 | 21979124 | A-T | Homo | INTRON | |
| SBS | Chr6 | 26982738 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 30730021 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 27013262 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 1167538 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4554657 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 13171613 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 8516780 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13985543 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14301667 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 24449143 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 380735 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 2964402 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2964403 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19766910 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 19907978 | A-G | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2761965 | 2761969 | 4 | |
| Deletion | Chr8 | 7993377 | 7993384 | 7 | |
| Deletion | Chr9 | 8292476 | 8292480 | 4 | |
| Deletion | Chr10 | 9225455 | 9225456 | 1 | |
| Deletion | Chr9 | 9726566 | 9726570 | 4 | |
| Deletion | Chr6 | 11615071 | 11615078 | 7 | |
| Deletion | Chr12 | 11688132 | 11688297 | 165 | |
| Deletion | Chr7 | 11692662 | 11692665 | 3 | |
| Deletion | Chr12 | 16607001 | 16683000 | 75999 | 2 |
| Deletion | Chr2 | 17984107 | 17984108 | 1 | |
| Deletion | Chr11 | 18261561 | 18261564 | 3 | |
| Deletion | Chr12 | 18936774 | 18936775 | 1 | OsKitaake12g139600 |
| Deletion | Chr8 | 19676368 | 19676369 | 1 | |
| Deletion | Chr11 | 20929120 | 20929121 | 1 | |
| Deletion | Chr6 | 23418237 | 23418245 | 8 | |
| Deletion | Chr6 | 27208006 | 27208007 | 1 | |
| Deletion | Chr2 | 33685709 | 33685724 | 15 | OsKitaake02g348300 |
| Deletion | Chr3 | 35619209 | 35619210 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 32289218 | 32289220 | 1 | |
| Insertion | Chr1 | 37206908 | 37206912 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4462903 | 4524177 | |
| Inversion | Chr2 | 4468758 | 4524189 | |
| Inversion | Chr12 | 23820396 | 23820501 | |
| Inversion | Chr12 | 23820403 | 23820507 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 15299884 | Chr1 | 1514334 |