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Mutant Information

Mutant Name	FN1275-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1275-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7760763 C-T Homo INTERGENIC
SBS Chr1 16635375 G-T Hetero INTERGENIC
SBS Chr1 44085512 A-C Hetero INTRON
SBS Chr2 11247436 T-A Hetero INTRON
SBS Chr2 21527694 G-T Homo INTERGENIC
SBS Chr2 25226363 G-A Homo INTERGENIC
SBS Chr2 36176658 T-G Homo INTERGENIC
SBS Chr3 25263648 A-C Homo INTERGENIC
SBS Chr5 4081804 C-T Hetero INTERGENIC
SBS Chr6 2428096 G-A Hetero INTERGENIC
SBS Chr6 21271394 C-T Hetero INTRON
SBS Chr7 4192982 T-C Hetero INTERGENIC
SBS Chr7 27316885 C-T Hetero INTERGENIC
SBS Chr8 6441099 A-C Hetero INTERGENIC
SBS Chr8 7585360 C-G Hetero INTERGENIC
SBS Chr9 3740998 C-T Homo INTERGENIC
SBS Chr9 7674114 A-G Hetero INTERGENIC
SBS Chr9 8621092 A-G Hetero INTERGENIC
SBS Chr10 3405477 A-G Homo INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr5 2397457 2397460 3
Deletion Chr2 4215260 4215261 1
Deletion Chr1 7247250 7247259 9 OsKitaake01g090800
Deletion Chr10 11979001 12703000 723999 69
Deletion Chr3 14245272 14245273 1
Deletion Chr11 17418854 17418858 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28019992 28019997 4
Insertion Chr11 16991160 16991164 3
Insertion Chr11 24049691 24049695 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7760763	C-T	Homo	INTERGENIC
SBS	Chr1	16635375	G-T	Hetero	INTERGENIC
SBS	Chr1	44085512	A-C	Hetero	INTRON
SBS	Chr2	11247436	T-A	Hetero	INTRON
SBS	Chr2	21527694	G-T	Homo	INTERGENIC
SBS	Chr2	25226363	G-A	Homo	INTERGENIC
SBS	Chr2	36176658	T-G	Homo	INTERGENIC
SBS	Chr3	25263648	A-C	Homo	INTERGENIC
SBS	Chr5	4081804	C-T	Hetero	INTERGENIC
SBS	Chr6	2428096	G-A	Hetero	INTERGENIC
SBS	Chr6	21271394	C-T	Hetero	INTRON
SBS	Chr7	4192982	T-C	Hetero	INTERGENIC
SBS	Chr7	27316885	C-T	Hetero	INTERGENIC
SBS	Chr8	6441099	A-C	Hetero	INTERGENIC
SBS	Chr8	7585360	C-G	Hetero	INTERGENIC
SBS	Chr9	3740998	C-T	Homo	INTERGENIC
SBS	Chr9	7674114	A-G	Hetero	INTERGENIC
SBS	Chr9	8621092	A-G	Hetero	INTERGENIC
SBS	Chr10	3405477	A-G	Homo	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr5	2397457	2397460	3
Deletion	Chr2	4215260	4215261	1
Deletion	Chr1	7247250	7247259	9	OsKitaake01g090800
Deletion	Chr10	11979001	12703000	723999	69
Deletion	Chr3	14245272	14245273	1
Deletion	Chr11	17418854	17418858	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes