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Mutant Information

Mutant Name	FN1282-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1282-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8817754 C-T Homo INTERGENIC
SBS Chr1 25313463 G-A Hetero INTERGENIC
SBS Chr1 29694185 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 32367130 T-C Hetero INTERGENIC
SBS Chr1 32660959 A-T Hetero UTR_3_PRIME
SBS Chr1 34024549 A-T Hetero INTRON
SBS Chr2 12133539 C-T Hetero INTERGENIC
SBS Chr3 2883852 C-T Hetero INTERGENIC
SBS Chr3 17078946 G-T Hetero INTERGENIC
SBS Chr3 21093897 C-T Hetero INTERGENIC
SBS Chr3 34226179 A-G Hetero INTERGENIC
SBS Chr4 11647818 C-T Homo INTERGENIC
SBS Chr4 13277249 C-T Homo INTERGENIC
SBS Chr5 8854492 T-C Homo INTRON
SBS Chr5 16063757 C-T Hetero INTERGENIC
SBS Chr5 17192669 A-T Homo INTERGENIC
SBS Chr5 17924952 A-T Homo INTERGENIC
SBS Chr5 24851345 T-G Hetero INTRON
SBS Chr5 26072932 C-T Hetero INTERGENIC
SBS Chr6 20871420 G-T Hetero INTERGENIC
SBS Chr6 23064034 G-A Hetero INTERGENIC
SBS Chr6 23449500 A-G Hetero INTERGENIC
SBS Chr7 18392094 A-T Homo INTRON
SBS Chr8 14640814 C-T Homo INTERGENIC
SBS Chr9 3129057 G-C Hetero INTERGENIC
SBS Chr9 6787552 C-T Hetero INTERGENIC
SBS Chr9 7960743 T-A Hetero INTERGENIC
SBS Chr9 12601376 G-C Hetero INTERGENIC
SBS Chr10 2474510 G-A Homo INTERGENIC
SBS Chr10 6156439 C-T Homo INTERGENIC
SBS Chr10 10223437 T-C Homo INTERGENIC
SBS Chr10 18403906 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 21567245 A-T Hetero UTR_5_PRIME
SBS Chr11 3153975 C-A Hetero INTERGENIC
SBS Chr11 6218228 G-A Hetero INTERGENIC
SBS Chr11 10525507 G-C Homo INTERGENIC
SBS Chr11 14795665 C-T Homo INTERGENIC
SBS Chr12 5476497 G-A Homo INTRON
SBS Chr12 17062932 T-G Hetero INTERGENIC
SBS Chr12 22648849 G-A Hetero UTR_5_PRIME

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1209172 1209180 8
Deletion Chr9 2755373 2755374 1
Deletion Chr3 2965681 2965683 2
Deletion Chr1 3856712 3856713 1
Deletion Chr4 4146991 4146992 1
Deletion Chr5 7455265 7455266 1
Deletion Chr11 9082228 9082232 4
Deletion Chr5 12088778 12088783 5
Deletion Chr7 13718001 13730000 11999
Deletion Chr2 14625215 14625217 2
Deletion Chr9 16497996 16498002 6
Deletion Chr6 18235853 18235865 12
Deletion Chr7 18396489 18396496 7
Deletion Chr8 19340818 19340824 6
Deletion Chr7 21382207 21382219 12
Deletion Chr2 26957473 26957482 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 15510718 15510721 2
Insertion Chr1 17221953 17221955 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8817754	C-T	Homo	INTERGENIC
SBS	Chr1	25313463	G-A	Hetero	INTERGENIC
SBS	Chr1	29694185	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	32367130	T-C	Hetero	INTERGENIC
SBS	Chr1	32660959	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	34024549	A-T	Hetero	INTRON
SBS	Chr2	12133539	C-T	Hetero	INTERGENIC
SBS	Chr3	2883852	C-T	Hetero	INTERGENIC
SBS	Chr3	17078946	G-T	Hetero	INTERGENIC
SBS	Chr3	21093897	C-T	Hetero	INTERGENIC
SBS	Chr3	34226179	A-G	Hetero	INTERGENIC
SBS	Chr4	11647818	C-T	Homo	INTERGENIC
SBS	Chr4	13277249	C-T	Homo	INTERGENIC
SBS	Chr5	8854492	T-C	Homo	INTRON
SBS	Chr5	16063757	C-T	Hetero	INTERGENIC
SBS	Chr5	17192669	A-T	Homo	INTERGENIC
SBS	Chr5	17924952	A-T	Homo	INTERGENIC
SBS	Chr5	24851345	T-G	Hetero	INTRON
SBS	Chr5	26072932	C-T	Hetero	INTERGENIC
SBS	Chr6	20871420	G-T	Hetero	INTERGENIC
SBS	Chr6	23064034	G-A	Hetero	INTERGENIC
SBS	Chr6	23449500	A-G	Hetero	INTERGENIC
SBS	Chr7	18392094	A-T	Homo	INTRON
SBS	Chr8	14640814	C-T	Homo	INTERGENIC
SBS	Chr9	3129057	G-C	Hetero	INTERGENIC
SBS	Chr9	6787552	C-T	Hetero	INTERGENIC
SBS	Chr9	7960743	T-A	Hetero	INTERGENIC
SBS	Chr9	12601376	G-C	Hetero	INTERGENIC
SBS	Chr10	2474510	G-A	Homo	INTERGENIC
SBS	Chr10	6156439	C-T	Homo	INTERGENIC
SBS	Chr10	10223437	T-C	Homo	INTERGENIC
SBS	Chr10	18403906	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21567245	A-T	Hetero	UTR_5_PRIME
SBS	Chr11	3153975	C-A	Hetero	INTERGENIC
SBS	Chr11	6218228	G-A	Hetero	INTERGENIC
SBS	Chr11	10525507	G-C	Homo	INTERGENIC
SBS	Chr11	14795665	C-T	Homo	INTERGENIC
SBS	Chr12	5476497	G-A	Homo	INTRON
SBS	Chr12	17062932	T-G	Hetero	INTERGENIC
SBS	Chr12	22648849	G-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1209172	1209180	8
Deletion	Chr9	2755373	2755374	1
Deletion	Chr3	2965681	2965683	2
Deletion	Chr1	3856712	3856713	1
Deletion	Chr4	4146991	4146992	1
Deletion	Chr5	7455265	7455266	1
Deletion	Chr11	9082228	9082232	4
Deletion	Chr5	12088778	12088783	5
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr2	14625215	14625217	2
Deletion	Chr9	16497996	16498002	6
Deletion	Chr6	18235853	18235865	12
Deletion	Chr7	18396489	18396496	7
Deletion	Chr8	19340818	19340824	6
Deletion	Chr7	21382207	21382219	12
Deletion	Chr2	26957473	26957482	9

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes