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Mutant Information

Mutant Name	FN1283-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1283-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8657452 T-A Homo INTERGENIC
SBS Chr1 8657453 A-T Homo INTERGENIC
SBS Chr1 32673096 C-T Hetero INTERGENIC
SBS Chr1 41716404 C-A Homo INTERGENIC
SBS Chr2 22351746 T-G Hetero INTERGENIC
SBS Chr2 22351755 C-T Hetero INTERGENIC
SBS Chr3 2794952 C-T Hetero INTERGENIC
SBS Chr3 7350692 A-G Hetero INTERGENIC
SBS Chr3 14319273 G-A Hetero INTERGENIC
SBS Chr3 14449041 G-A Hetero INTERGENIC
SBS Chr6 20232442 G-A Hetero INTERGENIC
SBS Chr6 25770991 G-A Hetero INTERGENIC
SBS Chr8 2779381 T-C Hetero INTERGENIC
SBS Chr8 26535159 T-A Homo INTRON
SBS Chr9 8541047 T-C Hetero INTERGENIC
SBS Chr9 11806419 A-C Homo INTRON
SBS Chr9 20907883 C-A Homo INTERGENIC
SBS Chr10 11856296 T-A Homo INTERGENIC
SBS Chr10 17040727 T-C Homo INTERGENIC
SBS Chr11 1734251 C-T Homo INTERGENIC
SBS Chr11 11762172 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g110200
SBS Chr11 14011498 A-G Homo INTERGENIC
SBS Chr11 22172807 G-A Hetero INTERGENIC
SBS Chr11 22545384 C-T Hetero INTERGENIC
SBS Chr11 24602998 G-A Hetero INTERGENIC
SBS Chr11 29342278 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3006976 3006981 5
Deletion Chr2 6935001 6959000 23999
Deletion Chr9 9685879 9685884 5
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr7 11291823 11291824 1
Deletion Chr4 12149360 12149365 5
Deletion Chr6 12386001 12450000 63999 8
Deletion Chr7 14483001 14493000 9999 OsKitaake07g119200
Deletion Chr12 16053283 16053284 1
Deletion Chr1 21788083 21788089 6
Deletion Chr5 22514136 22514138 2
Deletion Chr2 25164958 25164963 5
Deletion Chr4 26165849 26165857 8
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6785620 6785625 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27946780 28309745
Inversion Chr3 27946789 28309794

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 5819614 Chr2 36188693 2
Translocation Chr3 5819639 Chr2 36189493 2
Translocation Chr8 7404578 Chr7 14483137
Translocation Chr8 7405916 Chr3 7565337
Translocation Chr6 12447754 Chr1 24244072 OsKitaake06g133200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8657452	T-A	Homo	INTERGENIC
SBS	Chr1	8657453	A-T	Homo	INTERGENIC
SBS	Chr1	32673096	C-T	Hetero	INTERGENIC
SBS	Chr1	41716404	C-A	Homo	INTERGENIC
SBS	Chr2	22351746	T-G	Hetero	INTERGENIC
SBS	Chr2	22351755	C-T	Hetero	INTERGENIC
SBS	Chr3	2794952	C-T	Hetero	INTERGENIC
SBS	Chr3	7350692	A-G	Hetero	INTERGENIC
SBS	Chr3	14319273	G-A	Hetero	INTERGENIC
SBS	Chr3	14449041	G-A	Hetero	INTERGENIC
SBS	Chr6	20232442	G-A	Hetero	INTERGENIC
SBS	Chr6	25770991	G-A	Hetero	INTERGENIC
SBS	Chr8	2779381	T-C	Hetero	INTERGENIC
SBS	Chr8	26535159	T-A	Homo	INTRON
SBS	Chr9	8541047	T-C	Hetero	INTERGENIC
SBS	Chr9	11806419	A-C	Homo	INTRON
SBS	Chr9	20907883	C-A	Homo	INTERGENIC
SBS	Chr10	11856296	T-A	Homo	INTERGENIC
SBS	Chr10	17040727	T-C	Homo	INTERGENIC
SBS	Chr11	1734251	C-T	Homo	INTERGENIC
SBS	Chr11	11762172	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g110200
SBS	Chr11	14011498	A-G	Homo	INTERGENIC
SBS	Chr11	22172807	G-A	Hetero	INTERGENIC
SBS	Chr11	22545384	C-T	Hetero	INTERGENIC
SBS	Chr11	24602998	G-A	Hetero	INTERGENIC
SBS	Chr11	29342278	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3006976	3006981	5
Deletion	Chr2	6935001	6959000	23999
Deletion	Chr9	9685879	9685884	5
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr7	11291823	11291824	1
Deletion	Chr4	12149360	12149365	5
Deletion	Chr6	12386001	12450000	63999	8
Deletion	Chr7	14483001	14493000	9999	OsKitaake07g119200
Deletion	Chr12	16053283	16053284	1
Deletion	Chr1	21788083	21788089	6
Deletion	Chr5	22514136	22514138	2
Deletion	Chr2	25164958	25164963	5
Deletion	Chr4	26165849	26165857	8
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27946780	28309745
Inversion	Chr3	27946789	28309794

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes