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Mutant Information

Mutant Name	FN1284-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1284-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26146788 A-C Homo INTERGENIC
SBS Chr1 28589359 C-A Homo INTRON
SBS Chr1 39729818 C-T Hetero INTERGENIC
SBS Chr1 39729819 A-T Hetero INTERGENIC
SBS Chr2 7918145 C-G Hetero INTERGENIC
SBS Chr2 14677528 T-C Hetero INTERGENIC
SBS Chr2 17114460 G-A Hetero INTERGENIC
SBS Chr2 20881751 C-G Hetero INTERGENIC
SBS Chr2 23157862 G-T Hetero INTERGENIC
SBS Chr3 24535892 G-A Homo UTR_3_PRIME
SBS Chr3 24857079 C-A Homo INTRON
SBS Chr4 4980723 T-C Hetero INTERGENIC
SBS Chr4 14764183 G-A Hetero INTERGENIC
SBS Chr5 19526443 G-A Homo INTERGENIC
SBS Chr6 10184232 G-T Homo INTERGENIC
SBS Chr6 24394715 G-T Hetero INTERGENIC
SBS Chr6 27240902 A-C Hetero INTERGENIC
SBS Chr6 29610797 C-T Hetero INTERGENIC
SBS Chr7 7620831 C-G Hetero UTR_5_PRIME
SBS Chr7 24032614 A-C Hetero UTR_3_PRIME
SBS Chr7 29431202 G-A Homo INTERGENIC
SBS Chr8 13987667 G-A Hetero INTERGENIC
SBS Chr8 18852399 T-C Hetero INTERGENIC
SBS Chr8 20238293 C-T Hetero INTERGENIC
SBS Chr8 25201468 T-A Homo INTERGENIC
SBS Chr9 3060210 G-C Hetero INTERGENIC
SBS Chr9 3194067 G-T Homo INTERGENIC
SBS Chr9 8033532 G-A Homo INTERGENIC
SBS Chr9 13524025 G-A Hetero INTERGENIC
SBS Chr10 10054851 T-C Homo INTERGENIC
SBS Chr10 19720770 A-G Hetero UTR_3_PRIME
SBS Chr10 20347427 A-T Hetero INTERGENIC
SBS Chr11 8832471 C-T Hetero INTERGENIC
SBS Chr11 9042024 G-A Hetero INTERGENIC
SBS Chr11 9831773 G-C Hetero INTERGENIC
SBS Chr11 10475582 G-A Hetero INTERGENIC
SBS Chr11 20316957 G-A Homo INTRON
SBS Chr12 8687313 C-A Hetero INTERGENIC
SBS Chr12 19284165 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1780253 1780255 2
Deletion Chr9 3262607 3262608 1
Deletion Chr9 3954643 3954649 6
Deletion Chr3 5513344 5513346 2
Deletion Chr6 12171085 12171092 7
Deletion Chr8 14186966 14186971 5
Deletion Chr7 15804982 15804990 8
Deletion Chr11 17831562 17831563 1 OsKitaake11g139500
Deletion Chr11 20151970 20151971 1
Deletion Chr1 20521920 20521924 4
Deletion Chr1 21405437 21405438 1
Deletion Chr9 21988427 21988434 7
Deletion Chr11 22105226 22105227 1
Deletion Chr9 22753351 22753355 4
Deletion Chr2 25851819 25851824 5
Deletion Chr3 27769926 27769928 2
Deletion Chr6 28554001 28570000 15999 4
Deletion Chr2 34627662 34627663 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42375297 42375302 4
Insertion Chr1 6413509 6413512 2
Insertion Chr2 13850924 13850926 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5088908 5189453 OsKitaake05g057850
Inversion Chr5 5088922 5189464 OsKitaake05g057850
Inversion Chr10 21601326 21668309 2
Inversion Chr10 21601333 21668314 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 14394290 Chr1 26784385
Translocation Chr11 18102256 Chr5 5162625
Translocation Chr3 35100637 Chr1 17859586 OsKitaake03g384200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26146788	A-C	Homo	INTERGENIC
SBS	Chr1	28589359	C-A	Homo	INTRON
SBS	Chr1	39729818	C-T	Hetero	INTERGENIC
SBS	Chr1	39729819	A-T	Hetero	INTERGENIC
SBS	Chr2	7918145	C-G	Hetero	INTERGENIC
SBS	Chr2	14677528	T-C	Hetero	INTERGENIC
SBS	Chr2	17114460	G-A	Hetero	INTERGENIC
SBS	Chr2	20881751	C-G	Hetero	INTERGENIC
SBS	Chr2	23157862	G-T	Hetero	INTERGENIC
SBS	Chr3	24535892	G-A	Homo	UTR_3_PRIME
SBS	Chr3	24857079	C-A	Homo	INTRON
SBS	Chr4	4980723	T-C	Hetero	INTERGENIC
SBS	Chr4	14764183	G-A	Hetero	INTERGENIC
SBS	Chr5	19526443	G-A	Homo	INTERGENIC
SBS	Chr6	10184232	G-T	Homo	INTERGENIC
SBS	Chr6	24394715	G-T	Hetero	INTERGENIC
SBS	Chr6	27240902	A-C	Hetero	INTERGENIC
SBS	Chr6	29610797	C-T	Hetero	INTERGENIC
SBS	Chr7	7620831	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	24032614	A-C	Hetero	UTR_3_PRIME
SBS	Chr7	29431202	G-A	Homo	INTERGENIC
SBS	Chr8	13987667	G-A	Hetero	INTERGENIC
SBS	Chr8	18852399	T-C	Hetero	INTERGENIC
SBS	Chr8	20238293	C-T	Hetero	INTERGENIC
SBS	Chr8	25201468	T-A	Homo	INTERGENIC
SBS	Chr9	3060210	G-C	Hetero	INTERGENIC
SBS	Chr9	3194067	G-T	Homo	INTERGENIC
SBS	Chr9	8033532	G-A	Homo	INTERGENIC
SBS	Chr9	13524025	G-A	Hetero	INTERGENIC
SBS	Chr10	10054851	T-C	Homo	INTERGENIC
SBS	Chr10	19720770	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	20347427	A-T	Hetero	INTERGENIC
SBS	Chr11	8832471	C-T	Hetero	INTERGENIC
SBS	Chr11	9042024	G-A	Hetero	INTERGENIC
SBS	Chr11	9831773	G-C	Hetero	INTERGENIC
SBS	Chr11	10475582	G-A	Hetero	INTERGENIC
SBS	Chr11	20316957	G-A	Homo	INTRON
SBS	Chr12	8687313	C-A	Hetero	INTERGENIC
SBS	Chr12	19284165	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1780253	1780255	2
Deletion	Chr9	3262607	3262608	1
Deletion	Chr9	3954643	3954649	6
Deletion	Chr3	5513344	5513346	2
Deletion	Chr6	12171085	12171092	7
Deletion	Chr8	14186966	14186971	5
Deletion	Chr7	15804982	15804990	8
Deletion	Chr11	17831562	17831563	1	OsKitaake11g139500
Deletion	Chr11	20151970	20151971	1
Deletion	Chr1	20521920	20521924	4
Deletion	Chr1	21405437	21405438	1
Deletion	Chr9	21988427	21988434	7
Deletion	Chr11	22105226	22105227	1
Deletion	Chr9	22753351	22753355	4
Deletion	Chr2	25851819	25851824	5
Deletion	Chr3	27769926	27769928	2
Deletion	Chr6	28554001	28570000	15999	4
Deletion	Chr2	34627662	34627663	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5088908	5189453	OsKitaake05g057850
Inversion	Chr5	5088922	5189464	OsKitaake05g057850
Inversion	Chr10	21601326	21668309	2
Inversion	Chr10	21601333	21668314	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes