Search Kitaake

Mutant Information

Mutant Name	FN1288-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1288-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14516656 C-T Hetero INTRON
SBS Chr1 14516658 A-T Hetero INTRON
SBS Chr1 14886259 G-A Hetero INTERGENIC
SBS Chr1 21029170 T-G Hetero INTRON
SBS Chr1 38357192 C-T Homo INTERGENIC
SBS Chr1 39556384 T-G Hetero UTR_5_PRIME
SBS Chr2 22745796 C-T Hetero INTERGENIC
SBS Chr2 35788732 A-T Homo INTERGENIC
SBS Chr3 10412413 A-G Hetero INTERGENIC
SBS Chr3 25209436 A-T Hetero INTRON
SBS Chr4 2218055 A-T Homo INTRON
SBS Chr4 2904598 G-A Hetero INTERGENIC
SBS Chr4 7964998 G-A Hetero INTERGENIC
SBS Chr4 8746064 G-C Hetero INTERGENIC
SBS Chr4 17063697 T-C Homo INTERGENIC
SBS Chr4 30351278 T-C Homo INTERGENIC
SBS Chr4 32036889 A-T Homo UTR_5_PRIME
SBS Chr4 34684957 A-T Hetero INTERGENIC
SBS Chr5 2969928 C-T Hetero INTERGENIC
SBS Chr5 6672225 G-A Hetero INTERGENIC
SBS Chr6 4172845 G-A Homo INTRON
SBS Chr6 13273943 C-T Hetero INTERGENIC
SBS Chr6 13499389 A-G Hetero INTERGENIC
SBS Chr7 11112142 T-G Hetero INTERGENIC
SBS Chr7 20075221 C-A Homo INTERGENIC
SBS Chr7 25189418 A-G Hetero UTR_3_PRIME
SBS Chr7 25189420 A-G Hetero UTR_3_PRIME
SBS Chr7 27271784 A-G Hetero INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr10 2024933 C-G Hetero INTRON
SBS Chr10 7721267 A-G Hetero INTERGENIC
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr10 17455437 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g119000
SBS Chr10 17455438 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 419482 G-A Hetero INTERGENIC
SBS Chr11 4284046 G-A Homo INTERGENIC
SBS Chr11 13500465 T-G Homo INTERGENIC
SBS Chr12 14584209 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 16721053 T-C Hetero INTERGENIC
SBS Chr12 18703350 C-G Hetero SYNONYMOUS_CODING
SBS Chr12 19064656 T-A Homo INTERGENIC
SBS Chr12 26746835 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1112001 1156000 43999 4
Deletion Chr9 1881367 1881369 2 OsKitaake09g010200
Deletion Chr1 2183853 2183864 11
Deletion Chr11 6641041 6641053 12 OsKitaake11g078900
Deletion Chr7 11396460 11396468 8
Deletion Chr11 13656859 13656868 9
Deletion Chr12 18100001 18110000 9999
Deletion Chr10 18329033 18329038 5
Deletion Chr12 19841468 19841472 4
Deletion Chr8 20854202 20854208 6
Deletion Chr12 21416176 21416188 12
Deletion Chr4 21962408 21962419 11
Deletion Chr12 22332235 22332244 9
Deletion Chr4 23503517 23503522 5
Deletion Chr4 30777354 30777355 1
Deletion Chr4 31401099 31401103 4
Deletion Chr1 39266333 39266338 5 OsKitaake01g422200

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41346756 41346759 2
Insertion Chr9 10901848 10901851 2
Insertion Chr11 4963574 4963576 1
Insertion Chr11 7137989 7137992 2
Insertion Chr12 19122607 19122610 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 18100340 18695770
Inversion Chr12 18110186 18695775

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 408368 Chr3 19241910

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14516656	C-T	Hetero	INTRON
SBS	Chr1	14516658	A-T	Hetero	INTRON
SBS	Chr1	14886259	G-A	Hetero	INTERGENIC
SBS	Chr1	21029170	T-G	Hetero	INTRON
SBS	Chr1	38357192	C-T	Homo	INTERGENIC
SBS	Chr1	39556384	T-G	Hetero	UTR_5_PRIME
SBS	Chr2	22745796	C-T	Hetero	INTERGENIC
SBS	Chr2	35788732	A-T	Homo	INTERGENIC
SBS	Chr3	10412413	A-G	Hetero	INTERGENIC
SBS	Chr3	25209436	A-T	Hetero	INTRON
SBS	Chr4	2218055	A-T	Homo	INTRON
SBS	Chr4	2904598	G-A	Hetero	INTERGENIC
SBS	Chr4	7964998	G-A	Hetero	INTERGENIC
SBS	Chr4	8746064	G-C	Hetero	INTERGENIC
SBS	Chr4	17063697	T-C	Homo	INTERGENIC
SBS	Chr4	30351278	T-C	Homo	INTERGENIC
SBS	Chr4	32036889	A-T	Homo	UTR_5_PRIME
SBS	Chr4	34684957	A-T	Hetero	INTERGENIC
SBS	Chr5	2969928	C-T	Hetero	INTERGENIC
SBS	Chr5	6672225	G-A	Hetero	INTERGENIC
SBS	Chr6	4172845	G-A	Homo	INTRON
SBS	Chr6	13273943	C-T	Hetero	INTERGENIC
SBS	Chr6	13499389	A-G	Hetero	INTERGENIC
SBS	Chr7	11112142	T-G	Hetero	INTERGENIC
SBS	Chr7	20075221	C-A	Homo	INTERGENIC
SBS	Chr7	25189418	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	25189420	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	27271784	A-G	Hetero	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr10	2024933	C-G	Hetero	INTRON
SBS	Chr10	7721267	A-G	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr10	17455437	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g119000
SBS	Chr10	17455438	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	419482	G-A	Hetero	INTERGENIC
SBS	Chr11	4284046	G-A	Homo	INTERGENIC
SBS	Chr11	13500465	T-G	Homo	INTERGENIC
SBS	Chr12	14584209	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	16721053	T-C	Hetero	INTERGENIC
SBS	Chr12	18703350	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	19064656	T-A	Homo	INTERGENIC
SBS	Chr12	26746835	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1112001	1156000	43999	4
Deletion	Chr9	1881367	1881369	2	OsKitaake09g010200
Deletion	Chr1	2183853	2183864	11
Deletion	Chr11	6641041	6641053	12	OsKitaake11g078900
Deletion	Chr7	11396460	11396468	8
Deletion	Chr11	13656859	13656868	9
Deletion	Chr12	18100001	18110000	9999
Deletion	Chr10	18329033	18329038	5
Deletion	Chr12	19841468	19841472	4
Deletion	Chr8	20854202	20854208	6
Deletion	Chr12	21416176	21416188	12
Deletion	Chr4	21962408	21962419	11
Deletion	Chr12	22332235	22332244	9
Deletion	Chr4	23503517	23503522	5
Deletion	Chr4	30777354	30777355	1
Deletion	Chr4	31401099	31401103	4
Deletion	Chr1	39266333	39266338	5	OsKitaake01g422200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	18100340	18695770
Inversion	Chr12	18110186	18695775

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes