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Mutant Information

Mutant Name	FN1300-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1300-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9242947 A-T Homo INTERGENIC
SBS Chr1 22334022 A-G Hetero INTRON
SBS Chr1 22783163 C-A Hetero INTERGENIC
SBS Chr1 29057158 C-G Homo INTERGENIC
SBS Chr1 29164512 A-G Hetero INTERGENIC
SBS Chr1 37795083 A-G Homo INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 15409117 G-T Hetero INTERGENIC
SBS Chr2 15409118 G-T Hetero INTERGENIC
SBS Chr2 26842619 G-A Hetero INTERGENIC
SBS Chr2 32176671 A-G Homo INTRON
SBS Chr3 34452590 G-T Homo INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 33334403 G-T Hetero INTERGENIC
SBS Chr4 35946285 G-C Hetero INTRON
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr6 14676678 T-G Homo INTERGENIC
SBS Chr6 15794852 G-C Homo INTERGENIC
SBS Chr6 23923580 A-T Hetero INTERGENIC
SBS Chr6 25377354 G-A Hetero INTERGENIC
SBS Chr7 2386620 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g032450
SBS Chr7 12472470 A-T Homo INTERGENIC
SBS Chr8 7284622 C-T Hetero INTERGENIC
SBS Chr8 14361624 G-T Hetero INTERGENIC
SBS Chr8 14390839 C-G Hetero INTERGENIC
SBS Chr8 18221623 T-C Hetero INTERGENIC
SBS Chr9 331018 T-C Homo INTERGENIC
SBS Chr9 4216519 T-C Homo INTERGENIC
SBS Chr9 17004757 G-A Hetero INTERGENIC
SBS Chr10 9410227 C-T Hetero INTERGENIC
SBS Chr11 12276792 A-C Hetero INTRON
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 18231625 T-C Hetero INTERGENIC
SBS Chr11 20051953 C-T Hetero INTRON
SBS Chr11 26435806 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g214950
SBS Chr12 356519 G-T Hetero INTERGENIC
SBS Chr12 4342354 T-G Homo INTERGENIC
SBS Chr12 10878268 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2340616 2340617 1
Deletion Chr8 4125920 4125940 20
Deletion Chr7 5473743 5473756 13
Deletion Chr2 7450560 7450562 2
Deletion Chr6 7489307 7489308 1
Deletion Chr9 7968036 7968037 1
Deletion Chr7 8512146 8512153 7
Deletion Chr6 9226191 9226193 2
Deletion Chr7 12053225 12053226 1
Deletion Chr7 15834180 15834181 1
Deletion Chr5 18445908 18445914 6
Deletion Chr6 20993973 20993974 1 OsKitaake06g187100
Deletion Chr2 26721650 26721659 9
Deletion Chr11 29276001 29406000 129999 8
Deletion Chr2 32239873 32239885 12
Deletion Chr3 34889758 34889766 8 OsKitaake03g380700

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 865349 1673358
Inversion Chr2 865365 1673364

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13139225 Chr3 24759040
Translocation Chr7 13139935 Chr3 24759058
Translocation Chr10 19198620 Chr1 41594260 2
Translocation Chr10 19199215 Chr1 41594269 2
Translocation Chr11 29391069 Chr7 13101850

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9242947	A-T	Homo	INTERGENIC
SBS	Chr1	22334022	A-G	Hetero	INTRON
SBS	Chr1	22783163	C-A	Hetero	INTERGENIC
SBS	Chr1	29057158	C-G	Homo	INTERGENIC
SBS	Chr1	29164512	A-G	Hetero	INTERGENIC
SBS	Chr1	37795083	A-G	Homo	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	15409117	G-T	Hetero	INTERGENIC
SBS	Chr2	15409118	G-T	Hetero	INTERGENIC
SBS	Chr2	26842619	G-A	Hetero	INTERGENIC
SBS	Chr2	32176671	A-G	Homo	INTRON
SBS	Chr3	34452590	G-T	Homo	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	33334403	G-T	Hetero	INTERGENIC
SBS	Chr4	35946285	G-C	Hetero	INTRON
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr6	14676678	T-G	Homo	INTERGENIC
SBS	Chr6	15794852	G-C	Homo	INTERGENIC
SBS	Chr6	23923580	A-T	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Hetero	INTERGENIC
SBS	Chr7	2386620	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g032450
SBS	Chr7	12472470	A-T	Homo	INTERGENIC
SBS	Chr8	7284622	C-T	Hetero	INTERGENIC
SBS	Chr8	14361624	G-T	Hetero	INTERGENIC
SBS	Chr8	14390839	C-G	Hetero	INTERGENIC
SBS	Chr8	18221623	T-C	Hetero	INTERGENIC
SBS	Chr9	331018	T-C	Homo	INTERGENIC
SBS	Chr9	4216519	T-C	Homo	INTERGENIC
SBS	Chr9	17004757	G-A	Hetero	INTERGENIC
SBS	Chr10	9410227	C-T	Hetero	INTERGENIC
SBS	Chr11	12276792	A-C	Hetero	INTRON
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	18231625	T-C	Hetero	INTERGENIC
SBS	Chr11	20051953	C-T	Hetero	INTRON
SBS	Chr11	26435806	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g214950
SBS	Chr12	356519	G-T	Hetero	INTERGENIC
SBS	Chr12	4342354	T-G	Homo	INTERGENIC
SBS	Chr12	10878268	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2340616	2340617	1
Deletion	Chr8	4125920	4125940	20
Deletion	Chr7	5473743	5473756	13
Deletion	Chr2	7450560	7450562	2
Deletion	Chr6	7489307	7489308	1
Deletion	Chr9	7968036	7968037	1
Deletion	Chr7	8512146	8512153	7
Deletion	Chr6	9226191	9226193	2
Deletion	Chr7	12053225	12053226	1
Deletion	Chr7	15834180	15834181	1
Deletion	Chr5	18445908	18445914	6
Deletion	Chr6	20993973	20993974	1	OsKitaake06g187100
Deletion	Chr2	26721650	26721659	9
Deletion	Chr11	29276001	29406000	129999	8
Deletion	Chr2	32239873	32239885	12
Deletion	Chr3	34889758	34889766	8	OsKitaake03g380700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	865349	1673358
Inversion	Chr2	865365	1673364

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes