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Mutant Information

Mutant Name	FN1301-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1301-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3852898 G-T Hetero INTERGENIC
SBS Chr1 17722890 A-G Hetero INTERGENIC
SBS Chr1 17806072 C-A Hetero INTERGENIC
SBS Chr1 25762580 G-C Hetero INTERGENIC
SBS Chr1 32709524 G-T Hetero INTERGENIC
SBS Chr1 33778648 T-A Homo INTERGENIC
SBS Chr1 39289747 C-T Hetero INTERGENIC
SBS Chr1 39486971 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g426000
SBS Chr2 20980611 G-C Homo INTERGENIC
SBS Chr2 36297367 C-A Homo INTERGENIC
SBS Chr3 7078543 T-C Hetero START_GAINED
SBS Chr3 23200432 G-T Hetero INTERGENIC
SBS Chr3 30845520 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g323600
SBS Chr3 36338011 T-C Hetero INTERGENIC
SBS Chr4 8108295 C-A Hetero INTERGENIC
SBS Chr4 34894036 G-A Hetero INTRON
SBS Chr5 2719570 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g030900
SBS Chr5 7829258 A-G Hetero INTRON
SBS Chr5 11180270 G-A Hetero INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr6 10385109 A-T Hetero INTERGENIC
SBS Chr6 12286179 T-C Hetero INTERGENIC
SBS Chr6 17048866 C-T Hetero INTRON
SBS Chr6 27023623 C-T Hetero INTERGENIC
SBS Chr6 28309229 C-A Hetero INTERGENIC
SBS Chr7 5794341 G-A Hetero INTERGENIC
SBS Chr8 24075798 G-T Hetero INTERGENIC
SBS Chr8 28484928 T-A Hetero UTR_5_PRIME
SBS Chr9 8960410 A-G Hetero INTERGENIC
SBS Chr11 13051664 T-C Hetero INTERGENIC
SBS Chr12 8440784 C-A Hetero INTERGENIC
SBS Chr12 18906519 T-C Hetero INTERGENIC
SBS Chr12 20532350 C-T Hetero INTERGENIC
SBS Chr12 22932763 T-A Hetero INTERGENIC
SBS Chr12 23385764 T-C Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8001 27000 18999 OsKitaake07g000100
Deletion Chr1 3852918 3852919 1
Deletion Chr11 5798134 5798138 4 OsKitaake11g071000
Deletion Chr6 7250012 7250013 1
Deletion Chr7 9744513 9744520 7
Deletion Chr11 10240771 10240773 2
Deletion Chr5 10668555 10668561 6
Deletion Chr10 12918543 12918544 1
Deletion Chr2 13817486 13817651 165
Deletion Chr10 14039690 14039692 2
Deletion Chr5 14197524 14197526 2
Deletion Chr1 18390234 18390237 3
Deletion Chr5 19339441 19339442 1
Deletion Chr9 20839158 20839159 1
Deletion Chr8 23179485 23179595 110
Deletion Chr8 27093748 27093749 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 469848 469851 2
Insertion Chr10 3200395 3200397 1
Insertion Chr12 11211139 11211141 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 210405 526461
Inversion Chr5 21329706 21773078 OsKitaake05g177600
Inversion Chr5 21329710 21773079 OsKitaake05g177600
Inversion Chr1 23771092 23809790 2
Inversion Chr1 23771094 23809790 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1187524 Chr3 31837572
Translocation Chr5 1187644 Chr3 31837576
Translocation Chr8 1954398 Chr7 10584826
Translocation Chr12 27010071 Chr7 26096 OsKitaake12g226600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3852898	G-T	Hetero	INTERGENIC
SBS	Chr1	17722890	A-G	Hetero	INTERGENIC
SBS	Chr1	17806072	C-A	Hetero	INTERGENIC
SBS	Chr1	25762580	G-C	Hetero	INTERGENIC
SBS	Chr1	32709524	G-T	Hetero	INTERGENIC
SBS	Chr1	33778648	T-A	Homo	INTERGENIC
SBS	Chr1	39289747	C-T	Hetero	INTERGENIC
SBS	Chr1	39486971	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g426000
SBS	Chr2	20980611	G-C	Homo	INTERGENIC
SBS	Chr2	36297367	C-A	Homo	INTERGENIC
SBS	Chr3	7078543	T-C	Hetero	START_GAINED
SBS	Chr3	23200432	G-T	Hetero	INTERGENIC
SBS	Chr3	30845520	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g323600
SBS	Chr3	36338011	T-C	Hetero	INTERGENIC
SBS	Chr4	8108295	C-A	Hetero	INTERGENIC
SBS	Chr4	34894036	G-A	Hetero	INTRON
SBS	Chr5	2719570	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g030900
SBS	Chr5	7829258	A-G	Hetero	INTRON
SBS	Chr5	11180270	G-A	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr6	10385109	A-T	Hetero	INTERGENIC
SBS	Chr6	12286179	T-C	Hetero	INTERGENIC
SBS	Chr6	17048866	C-T	Hetero	INTRON
SBS	Chr6	27023623	C-T	Hetero	INTERGENIC
SBS	Chr6	28309229	C-A	Hetero	INTERGENIC
SBS	Chr7	5794341	G-A	Hetero	INTERGENIC
SBS	Chr8	24075798	G-T	Hetero	INTERGENIC
SBS	Chr8	28484928	T-A	Hetero	UTR_5_PRIME
SBS	Chr9	8960410	A-G	Hetero	INTERGENIC
SBS	Chr11	13051664	T-C	Hetero	INTERGENIC
SBS	Chr12	8440784	C-A	Hetero	INTERGENIC
SBS	Chr12	18906519	T-C	Hetero	INTERGENIC
SBS	Chr12	20532350	C-T	Hetero	INTERGENIC
SBS	Chr12	22932763	T-A	Hetero	INTERGENIC
SBS	Chr12	23385764	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8001	27000	18999	OsKitaake07g000100
Deletion	Chr1	3852918	3852919	1
Deletion	Chr11	5798134	5798138	4	OsKitaake11g071000
Deletion	Chr6	7250012	7250013	1
Deletion	Chr7	9744513	9744520	7
Deletion	Chr11	10240771	10240773	2
Deletion	Chr5	10668555	10668561	6
Deletion	Chr10	12918543	12918544	1
Deletion	Chr2	13817486	13817651	165
Deletion	Chr10	14039690	14039692	2
Deletion	Chr5	14197524	14197526	2
Deletion	Chr1	18390234	18390237	3
Deletion	Chr5	19339441	19339442	1
Deletion	Chr9	20839158	20839159	1
Deletion	Chr8	23179485	23179595	110
Deletion	Chr8	27093748	27093749	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	210405	526461
Inversion	Chr5	21329706	21773078	OsKitaake05g177600
Inversion	Chr5	21329710	21773079	OsKitaake05g177600
Inversion	Chr1	23771092	23809790	2
Inversion	Chr1	23771094	23809790	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes