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Mutant Information

Mutant Name	FN1302-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1302-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12879205 C-A Hetero INTERGENIC
SBS Chr1 37879673 C-A Hetero INTERGENIC
SBS Chr1 37879674 G-A Hetero INTERGENIC
SBS Chr1 39281321 C-A Hetero INTERGENIC
SBS Chr1 41665487 G-T Hetero INTERGENIC
SBS Chr1 41665488 G-T Hetero INTERGENIC
SBS Chr1 43546477 T-A Hetero INTRON
SBS Chr2 14295333 A-G Hetero INTERGENIC
SBS Chr2 17958980 T-C Homo INTERGENIC
SBS Chr2 22346473 G-A Hetero INTERGENIC
SBS Chr2 30604922 G-C Hetero UTR_3_PRIME
SBS Chr3 14470174 G-A Homo INTERGENIC
SBS Chr3 26547583 G-A Hetero INTERGENIC
SBS Chr3 32665818 C-G Hetero INTRON
SBS Chr3 33896584 A-G Hetero INTRON
SBS Chr4 13711120 G-A Hetero INTERGENIC
SBS Chr4 17850730 G-A Hetero INTERGENIC
SBS Chr4 20470198 C-T Hetero INTERGENIC
SBS Chr4 29044117 T-A Homo INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr4 32895274 A-C Homo INTERGENIC
SBS Chr5 9206195 G-A Homo INTERGENIC
SBS Chr6 9363665 T-C Hetero INTRON
SBS Chr6 15313406 C-T Hetero INTERGENIC
SBS Chr6 15723758 A-T Hetero INTRON
SBS Chr6 17256456 A-G Hetero INTERGENIC
SBS Chr7 4241996 T-G Homo INTERGENIC
SBS Chr7 7774138 C-T Homo INTERGENIC
SBS Chr7 19581968 C-A Homo SYNONYMOUS_CODING
SBS Chr8 11141666 G-A Homo INTERGENIC
SBS Chr8 12093368 G-A Homo INTERGENIC
SBS Chr8 12093370 G-A Homo INTERGENIC
SBS Chr10 5493461 G-A Hetero INTERGENIC
SBS Chr10 20813193 A-G Hetero INTERGENIC
SBS Chr11 4939056 T-A Hetero INTERGENIC
SBS Chr11 20504264 C-T Hetero INTERGENIC
SBS Chr11 26349086 T-C Hetero INTERGENIC
SBS Chr11 29541718 C-A Hetero INTERGENIC
SBS Chr12 7019806 C-T Homo INTERGENIC
SBS Chr12 10564350 C-T Hetero INTERGENIC
SBS Chr12 10761112 C-T Homo INTERGENIC
SBS Chr12 26513234 A-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 86160 86161 1
Deletion Chr6 106605 106614 9
Deletion Chr2 638869 638870 1
Deletion Chr8 4168407 4168408 1 OsKitaake08g047300
Deletion Chr7 7615093 7615099 6
Deletion Chr11 9232325 9232327 2
Deletion Chr9 10620105 10620108 3
Deletion Chr1 11569861 11570023 162
Deletion Chr8 11921001 12086000 164999 10
Deletion Chr9 14343846 14343852 6
Deletion Chr5 14715757 14715759 2
Deletion Chr8 15743184 15743196 12
Deletion Chr7 16224161 16224162 1
Deletion Chr10 16327001 16484000 156999 21
Deletion Chr10 16491001 16618000 126999 15
Deletion Chr3 16494217 16494221 4
Deletion Chr4 17575052 17575053 1
Deletion Chr2 18427200 18427204 4
Deletion Chr3 18785687 18785689 2
Deletion Chr4 23090742 23090748 6
Deletion Chr11 27029455 27029459 4 OsKitaake11g220300
Deletion Chr1 34704470 34704472 2
Deletion Chr4 36936387 36936391 4
Deletion Chr1 37968253 37968254 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24326537 24326540 2
Insertion Chr2 28464601 28464603 1
Insertion Chr3 25354000 25354003 2
Insertion Chr4 36876134 36876137 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12879205	C-A	Hetero	INTERGENIC
SBS	Chr1	37879673	C-A	Hetero	INTERGENIC
SBS	Chr1	37879674	G-A	Hetero	INTERGENIC
SBS	Chr1	39281321	C-A	Hetero	INTERGENIC
SBS	Chr1	41665487	G-T	Hetero	INTERGENIC
SBS	Chr1	41665488	G-T	Hetero	INTERGENIC
SBS	Chr1	43546477	T-A	Hetero	INTRON
SBS	Chr2	14295333	A-G	Hetero	INTERGENIC
SBS	Chr2	17958980	T-C	Homo	INTERGENIC
SBS	Chr2	22346473	G-A	Hetero	INTERGENIC
SBS	Chr2	30604922	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	14470174	G-A	Homo	INTERGENIC
SBS	Chr3	26547583	G-A	Hetero	INTERGENIC
SBS	Chr3	32665818	C-G	Hetero	INTRON
SBS	Chr3	33896584	A-G	Hetero	INTRON
SBS	Chr4	13711120	G-A	Hetero	INTERGENIC
SBS	Chr4	17850730	G-A	Hetero	INTERGENIC
SBS	Chr4	20470198	C-T	Hetero	INTERGENIC
SBS	Chr4	29044117	T-A	Homo	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr4	32895274	A-C	Homo	INTERGENIC
SBS	Chr5	9206195	G-A	Homo	INTERGENIC
SBS	Chr6	9363665	T-C	Hetero	INTRON
SBS	Chr6	15313406	C-T	Hetero	INTERGENIC
SBS	Chr6	15723758	A-T	Hetero	INTRON
SBS	Chr6	17256456	A-G	Hetero	INTERGENIC
SBS	Chr7	4241996	T-G	Homo	INTERGENIC
SBS	Chr7	7774138	C-T	Homo	INTERGENIC
SBS	Chr7	19581968	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	11141666	G-A	Homo	INTERGENIC
SBS	Chr8	12093368	G-A	Homo	INTERGENIC
SBS	Chr8	12093370	G-A	Homo	INTERGENIC
SBS	Chr10	5493461	G-A	Hetero	INTERGENIC
SBS	Chr10	20813193	A-G	Hetero	INTERGENIC
SBS	Chr11	4939056	T-A	Hetero	INTERGENIC
SBS	Chr11	20504264	C-T	Hetero	INTERGENIC
SBS	Chr11	26349086	T-C	Hetero	INTERGENIC
SBS	Chr11	29541718	C-A	Hetero	INTERGENIC
SBS	Chr12	7019806	C-T	Homo	INTERGENIC
SBS	Chr12	10564350	C-T	Hetero	INTERGENIC
SBS	Chr12	10761112	C-T	Homo	INTERGENIC
SBS	Chr12	26513234	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	86160	86161	1
Deletion	Chr6	106605	106614	9
Deletion	Chr2	638869	638870	1
Deletion	Chr8	4168407	4168408	1	OsKitaake08g047300
Deletion	Chr7	7615093	7615099	6
Deletion	Chr11	9232325	9232327	2
Deletion	Chr9	10620105	10620108	3
Deletion	Chr1	11569861	11570023	162
Deletion	Chr8	11921001	12086000	164999	10
Deletion	Chr9	14343846	14343852	6
Deletion	Chr5	14715757	14715759	2
Deletion	Chr8	15743184	15743196	12
Deletion	Chr7	16224161	16224162	1
Deletion	Chr10	16327001	16484000	156999	21
Deletion	Chr10	16491001	16618000	126999	15
Deletion	Chr3	16494217	16494221	4
Deletion	Chr4	17575052	17575053	1
Deletion	Chr2	18427200	18427204	4
Deletion	Chr3	18785687	18785689	2
Deletion	Chr4	23090742	23090748	6
Deletion	Chr11	27029455	27029459	4	OsKitaake11g220300
Deletion	Chr1	34704470	34704472	2
Deletion	Chr4	36936387	36936391	4
Deletion	Chr1	37968253	37968254	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes