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Mutant Information

Mutant Name	FN1304-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1304-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12426492 A-G Hetero INTRON
SBS Chr1 12657367 G-A Hetero INTERGENIC
SBS Chr1 14632498 T-C Hetero INTERGENIC
SBS Chr1 23052954 G-A Homo INTERGENIC
SBS Chr1 25726482 C-A Hetero INTERGENIC
SBS Chr2 10430939 G-A Hetero INTERGENIC
SBS Chr2 10430940 G-A Hetero INTERGENIC
SBS Chr2 14438497 G-A Hetero INTERGENIC
SBS Chr2 33758320 C-T Hetero INTERGENIC
SBS Chr2 34644112 G-T Hetero INTRON
SBS Chr2 34904283 T-C Hetero INTERGENIC
SBS Chr3 15815336 G-T Hetero INTERGENIC
SBS Chr3 16704553 C-T Hetero INTERGENIC
SBS Chr3 20166820 G-A Hetero INTERGENIC
SBS Chr3 20166821 C-T Hetero INTERGENIC
SBS Chr3 25831471 T-A Hetero INTERGENIC
SBS Chr4 27059312 A-G Homo INTERGENIC
SBS Chr5 8449799 T-A Hetero INTERGENIC
SBS Chr5 9704634 T-A Hetero INTERGENIC
SBS Chr5 10333757 A-G Hetero INTERGENIC
SBS Chr5 12297043 A-G Hetero INTERGENIC
SBS Chr5 17752478 G-A Hetero INTERGENIC
SBS Chr5 18902133 G-A Hetero INTERGENIC
SBS Chr5 25231253 G-T Homo INTERGENIC
SBS Chr6 5928151 T-A Homo INTERGENIC
SBS Chr7 6525077 C-T Homo INTERGENIC
SBS Chr7 9116962 T-A Homo INTERGENIC
SBS Chr7 24202887 G-A Hetero INTRON
SBS Chr8 15011124 G-A Hetero INTERGENIC
SBS Chr8 28824797 A-T Hetero INTRON
SBS Chr9 3884001 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g020800
SBS Chr9 5522546 A-G Hetero INTERGENIC
SBS Chr9 19510729 A-C Homo INTERGENIC
SBS Chr9 21869490 G-A Hetero INTRON
SBS Chr10 7868269 T-G Hetero INTERGENIC
SBS Chr10 19460759 C-A Homo INTERGENIC
SBS Chr11 7854716 G-A Homo INTRON
SBS Chr11 18338385 T-C Homo INTERGENIC
SBS Chr11 23639303 A-G Hetero INTERGENIC
SBS Chr12 3630010 C-T Hetero INTERGENIC
SBS Chr12 21058930 T-C Hetero INTERGENIC
SBS Chr12 24688132 C-T Hetero INTRON
SBS Chr12 25626740 G-A Hetero INTERGENIC
SBS Chr12 25704162 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g212200

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5255130 5255132 2
Deletion Chr9 5477001 5501000 23999 OsKitaake09g031600
Deletion Chr8 6673517 6673527 10
Deletion Chr11 9128356 9128367 11
Deletion Chr6 9841766 9841775 9
Deletion Chr12 11340346 11340355 9
Deletion Chr4 13198433 13198438 5
Deletion Chr11 14357355 14357363 8
Deletion Chr2 14522663 14522664 1
Deletion Chr1 18014635 18014720 85
Deletion Chr4 22481454 22481460 6
Deletion Chr4 22653225 22653227 2
Deletion Chr9 22733788 22733791 3
Deletion Chr6 25289001 25421000 131999 16
Deletion Chr2 26106172 26106175 3
Deletion Chr1 27080803 27080913 110
Deletion Chr4 27603030 27603033 3 OsKitaake04g202500
Deletion Chr2 27723666 27723668 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 21300023 21300025 1
Insertion Chr11 6420656 6420659 2
Insertion Chr2 35328984 35328987 2
Insertion Chr6 2211286 2211291 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5498277 6432227
Inversion Chr4 8810494 8813502
Inversion Chr4 8810498 8813506
Inversion Chr1 27595269 27845479 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12935205 Chr1 25810350 2
Translocation Chr12 12935208 Chr1 25330944 OsKitaake12g108600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12426492	A-G	Hetero	INTRON
SBS	Chr1	12657367	G-A	Hetero	INTERGENIC
SBS	Chr1	14632498	T-C	Hetero	INTERGENIC
SBS	Chr1	23052954	G-A	Homo	INTERGENIC
SBS	Chr1	25726482	C-A	Hetero	INTERGENIC
SBS	Chr2	10430939	G-A	Hetero	INTERGENIC
SBS	Chr2	10430940	G-A	Hetero	INTERGENIC
SBS	Chr2	14438497	G-A	Hetero	INTERGENIC
SBS	Chr2	33758320	C-T	Hetero	INTERGENIC
SBS	Chr2	34644112	G-T	Hetero	INTRON
SBS	Chr2	34904283	T-C	Hetero	INTERGENIC
SBS	Chr3	15815336	G-T	Hetero	INTERGENIC
SBS	Chr3	16704553	C-T	Hetero	INTERGENIC
SBS	Chr3	20166820	G-A	Hetero	INTERGENIC
SBS	Chr3	20166821	C-T	Hetero	INTERGENIC
SBS	Chr3	25831471	T-A	Hetero	INTERGENIC
SBS	Chr4	27059312	A-G	Homo	INTERGENIC
SBS	Chr5	8449799	T-A	Hetero	INTERGENIC
SBS	Chr5	9704634	T-A	Hetero	INTERGENIC
SBS	Chr5	10333757	A-G	Hetero	INTERGENIC
SBS	Chr5	12297043	A-G	Hetero	INTERGENIC
SBS	Chr5	17752478	G-A	Hetero	INTERGENIC
SBS	Chr5	18902133	G-A	Hetero	INTERGENIC
SBS	Chr5	25231253	G-T	Homo	INTERGENIC
SBS	Chr6	5928151	T-A	Homo	INTERGENIC
SBS	Chr7	6525077	C-T	Homo	INTERGENIC
SBS	Chr7	9116962	T-A	Homo	INTERGENIC
SBS	Chr7	24202887	G-A	Hetero	INTRON
SBS	Chr8	15011124	G-A	Hetero	INTERGENIC
SBS	Chr8	28824797	A-T	Hetero	INTRON
SBS	Chr9	3884001	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g020800
SBS	Chr9	5522546	A-G	Hetero	INTERGENIC
SBS	Chr9	19510729	A-C	Homo	INTERGENIC
SBS	Chr9	21869490	G-A	Hetero	INTRON
SBS	Chr10	7868269	T-G	Hetero	INTERGENIC
SBS	Chr10	19460759	C-A	Homo	INTERGENIC
SBS	Chr11	7854716	G-A	Homo	INTRON
SBS	Chr11	18338385	T-C	Homo	INTERGENIC
SBS	Chr11	23639303	A-G	Hetero	INTERGENIC
SBS	Chr12	3630010	C-T	Hetero	INTERGENIC
SBS	Chr12	21058930	T-C	Hetero	INTERGENIC
SBS	Chr12	24688132	C-T	Hetero	INTRON
SBS	Chr12	25626740	G-A	Hetero	INTERGENIC
SBS	Chr12	25704162	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g212200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5255130	5255132	2
Deletion	Chr9	5477001	5501000	23999	OsKitaake09g031600
Deletion	Chr8	6673517	6673527	10
Deletion	Chr11	9128356	9128367	11
Deletion	Chr6	9841766	9841775	9
Deletion	Chr12	11340346	11340355	9
Deletion	Chr4	13198433	13198438	5
Deletion	Chr11	14357355	14357363	8
Deletion	Chr2	14522663	14522664	1
Deletion	Chr1	18014635	18014720	85
Deletion	Chr4	22481454	22481460	6
Deletion	Chr4	22653225	22653227	2
Deletion	Chr9	22733788	22733791	3
Deletion	Chr6	25289001	25421000	131999	16
Deletion	Chr2	26106172	26106175	3
Deletion	Chr1	27080803	27080913	110
Deletion	Chr4	27603030	27603033	3	OsKitaake04g202500
Deletion	Chr2	27723666	27723668	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5498277	6432227
Inversion	Chr4	8810494	8813502
Inversion	Chr4	8810498	8813506
Inversion	Chr1	27595269	27845479	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes