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Mutant Information

Mutant Name	FN1317-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1317-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3479959 T-A Hetero INTERGENIC
SBS Chr1 10044497 A-G Hetero INTERGENIC
SBS Chr1 19353866 G-A Hetero INTERGENIC
SBS Chr2 31997795 G-A Hetero INTRON
SBS Chr3 1114998 G-A Hetero INTERGENIC
SBS Chr3 20384093 T-C Hetero INTRON
SBS Chr3 23144382 G-A Hetero INTERGENIC
SBS Chr3 23242097 C-T Hetero INTERGENIC
SBS Chr3 24289949 A-G Hetero INTERGENIC
SBS Chr3 24669479 G-C Hetero INTERGENIC
SBS Chr3 26697034 G-A Homo INTERGENIC
SBS Chr3 26697035 C-A Homo INTERGENIC
SBS Chr3 31058590 T-G Homo INTRON
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 9593353 A-C Hetero INTERGENIC
SBS Chr4 18022121 C-T Hetero INTERGENIC
SBS Chr4 26448188 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g189700
SBS Chr5 7201412 A-T Hetero INTERGENIC
SBS Chr5 7201417 A-T Hetero INTERGENIC
SBS Chr5 12814724 G-A Hetero INTERGENIC
SBS Chr5 16501667 A-G Hetero INTERGENIC
SBS Chr7 8476191 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 26802485 G-A Homo INTERGENIC
SBS Chr8 5071450 T-C Hetero INTERGENIC
SBS Chr8 5945504 G-T Hetero INTRON
SBS Chr8 11525096 A-C Hetero INTERGENIC
SBS Chr8 13439458 G-A Hetero INTERGENIC
SBS Chr8 20970218 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g157400
SBS Chr8 24451572 G-A Hetero INTRON
SBS Chr8 25667308 A-T Hetero INTERGENIC
SBS Chr9 3907507 C-T Homo INTERGENIC
SBS Chr10 3791748 C-G Homo INTERGENIC
SBS Chr10 18814053 T-A Hetero INTERGENIC
SBS Chr11 19079634 G-A Hetero INTERGENIC
SBS Chr11 23300012 A-T Hetero INTERGENIC
SBS Chr12 8763903 A-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1824490 1824495 5
Deletion Chr7 2835537 2835539 2
Deletion Chr2 17761106 17761108 2
Deletion Chr11 17802139 17802141 2
Deletion Chr6 18379239 18379240 1
Deletion Chr12 18419567 18419569 2
Deletion Chr8 21333512 21333514 2
Deletion Chr12 21642835 21642846 11 OsKitaake12g169600
Deletion Chr1 29077620 29077622 2
Deletion Chr5 30258420 30258421 1
Deletion Chr4 31183480 31183482 2
Deletion Chr1 37159035 37159036 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37862613 37862618 4
Insertion Chr3 9660691 9660694 2
Insertion Chr5 14569030 14569033 2
Insertion Chr6 5878477 5878480 2
Insertion Chr9 4254914 4254917 2
Insertion Chr11 2375977 2375980 2
Insertion Chr11 19977123 19977126 2
Insertion Chr10 8267973 8267982 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3479959	T-A	Hetero	INTERGENIC
SBS	Chr1	10044497	A-G	Hetero	INTERGENIC
SBS	Chr1	19353866	G-A	Hetero	INTERGENIC
SBS	Chr2	31997795	G-A	Hetero	INTRON
SBS	Chr3	1114998	G-A	Hetero	INTERGENIC
SBS	Chr3	20384093	T-C	Hetero	INTRON
SBS	Chr3	23144382	G-A	Hetero	INTERGENIC
SBS	Chr3	23242097	C-T	Hetero	INTERGENIC
SBS	Chr3	24289949	A-G	Hetero	INTERGENIC
SBS	Chr3	24669479	G-C	Hetero	INTERGENIC
SBS	Chr3	26697034	G-A	Homo	INTERGENIC
SBS	Chr3	26697035	C-A	Homo	INTERGENIC
SBS	Chr3	31058590	T-G	Homo	INTRON
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	9593353	A-C	Hetero	INTERGENIC
SBS	Chr4	18022121	C-T	Hetero	INTERGENIC
SBS	Chr4	26448188	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g189700
SBS	Chr5	7201412	A-T	Hetero	INTERGENIC
SBS	Chr5	7201417	A-T	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Hetero	INTERGENIC
SBS	Chr5	16501667	A-G	Hetero	INTERGENIC
SBS	Chr7	8476191	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	26802485	G-A	Homo	INTERGENIC
SBS	Chr8	5071450	T-C	Hetero	INTERGENIC
SBS	Chr8	5945504	G-T	Hetero	INTRON
SBS	Chr8	11525096	A-C	Hetero	INTERGENIC
SBS	Chr8	13439458	G-A	Hetero	INTERGENIC
SBS	Chr8	20970218	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g157400
SBS	Chr8	24451572	G-A	Hetero	INTRON
SBS	Chr8	25667308	A-T	Hetero	INTERGENIC
SBS	Chr9	3907507	C-T	Homo	INTERGENIC
SBS	Chr10	3791748	C-G	Homo	INTERGENIC
SBS	Chr10	18814053	T-A	Hetero	INTERGENIC
SBS	Chr11	19079634	G-A	Hetero	INTERGENIC
SBS	Chr11	23300012	A-T	Hetero	INTERGENIC
SBS	Chr12	8763903	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1824490	1824495	5
Deletion	Chr7	2835537	2835539	2
Deletion	Chr2	17761106	17761108	2
Deletion	Chr11	17802139	17802141	2
Deletion	Chr6	18379239	18379240	1
Deletion	Chr12	18419567	18419569	2
Deletion	Chr8	21333512	21333514	2
Deletion	Chr12	21642835	21642846	11	OsKitaake12g169600
Deletion	Chr1	29077620	29077622	2
Deletion	Chr5	30258420	30258421	1
Deletion	Chr4	31183480	31183482	2
Deletion	Chr1	37159035	37159036	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes