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Mutant Information

Mutant Name	FN1320-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1320-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9765356 C-G Homo INTERGENIC
SBS Chr1 32775438 G-C Hetero INTERGENIC
SBS Chr1 33610360 A-G Hetero INTERGENIC
SBS Chr1 38083271 G-A Hetero INTRON
SBS Chr1 38083272 G-A Hetero INTRON
SBS Chr2 15437105 A-G Hetero INTRON
SBS Chr3 1221731 C-G Hetero INTERGENIC
SBS Chr3 4024333 G-T Hetero INTERGENIC
SBS Chr3 8612568 A-G Hetero INTERGENIC
SBS Chr3 20598779 C-T Homo INTERGENIC
SBS Chr3 25430931 C-T Hetero INTERGENIC
SBS Chr3 35693058 G-A Homo INTERGENIC
SBS Chr4 12554769 G-A Hetero INTERGENIC
SBS Chr4 14028270 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g067250
SBS Chr4 20576464 T-A Homo INTERGENIC
SBS Chr5 17046443 T-C Hetero INTERGENIC
SBS Chr5 26052303 A-T Hetero INTERGENIC
SBS Chr6 12925039 C-T Hetero INTERGENIC
SBS Chr6 17742469 C-T Hetero INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr6 29161468 C-G Homo INTRON
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 20675895 G-A Hetero INTERGENIC
SBS Chr7 20675896 C-A Hetero INTERGENIC
SBS Chr7 27605512 T-A Hetero INTERGENIC
SBS Chr7 27637082 A-G Hetero INTERGENIC
SBS Chr8 3192453 G-A Hetero INTERGENIC
SBS Chr8 22153892 T-A Hetero INTERGENIC
SBS Chr8 22770366 G-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 1719692 C-A Hetero INTERGENIC
SBS Chr10 2647627 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 12180121 C-T Hetero INTERGENIC
SBS Chr10 16817805 A-G Hetero INTERGENIC
SBS Chr10 17371895 C-A Hetero INTERGENIC
SBS Chr10 18310767 C-T Homo UTR_5_PRIME
SBS Chr10 19538622 G-A Hetero INTERGENIC
SBS Chr11 17077218 C-T Hetero INTERGENIC
SBS Chr12 22295078 A-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 454034 454040 6
Deletion Chr2 1886428 1886436 8 OsKitaake02g028900
Deletion Chr2 4659047 4659048 1
Deletion Chr7 10240412 10240419 7
Deletion Chr11 12459798 12459799 1
Deletion Chr12 15814702 15814717 15
Deletion Chr1 18207521 18207527 6
Deletion Chr9 19808975 19808980 5 OsKitaake09g164000
Deletion Chr3 22268486 22268488 2
Deletion Chr4 23115115 23115116 1 OsKitaake04g140900
Deletion Chr2 24802001 24846000 43999 9
Deletion Chr7 26068939 26068941 2
Deletion Chr4 35206962 35206978 16

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36274001 36274005 3
Insertion Chr7 4715520 4715523 2
Insertion Chr3 19362193 19362195 1
Insertion Chr8 22823116 22823118 1
Insertion Chr10 6741897 6741900 2
Insertion Chr12 10853863 10853868 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 18049552 18053587 OsKitaake11g141200
Inversion Chr11 18049554 18053590 OsKitaake11g141200
Inversion Chr6 23106865 23107613 OsKitaake06g203600
Inversion Chr6 23106866 23107621 OsKitaake06g203600
Inversion Chr1 38162708 38166052
Inversion Chr1 38162717 38166054

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 16465365 Chr3 27057522
Translocation Chr8 16465376 Chr3 27069069 OsKitaake03g278800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9765356	C-G	Homo	INTERGENIC
SBS	Chr1	32775438	G-C	Hetero	INTERGENIC
SBS	Chr1	33610360	A-G	Hetero	INTERGENIC
SBS	Chr1	38083271	G-A	Hetero	INTRON
SBS	Chr1	38083272	G-A	Hetero	INTRON
SBS	Chr2	15437105	A-G	Hetero	INTRON
SBS	Chr3	1221731	C-G	Hetero	INTERGENIC
SBS	Chr3	4024333	G-T	Hetero	INTERGENIC
SBS	Chr3	8612568	A-G	Hetero	INTERGENIC
SBS	Chr3	20598779	C-T	Homo	INTERGENIC
SBS	Chr3	25430931	C-T	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Homo	INTERGENIC
SBS	Chr4	12554769	G-A	Hetero	INTERGENIC
SBS	Chr4	14028270	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g067250
SBS	Chr4	20576464	T-A	Homo	INTERGENIC
SBS	Chr5	17046443	T-C	Hetero	INTERGENIC
SBS	Chr5	26052303	A-T	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Hetero	INTERGENIC
SBS	Chr6	17742469	C-T	Hetero	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr6	29161468	C-G	Homo	INTRON
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	20675895	G-A	Hetero	INTERGENIC
SBS	Chr7	20675896	C-A	Hetero	INTERGENIC
SBS	Chr7	27605512	T-A	Hetero	INTERGENIC
SBS	Chr7	27637082	A-G	Hetero	INTERGENIC
SBS	Chr8	3192453	G-A	Hetero	INTERGENIC
SBS	Chr8	22153892	T-A	Hetero	INTERGENIC
SBS	Chr8	22770366	G-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	1719692	C-A	Hetero	INTERGENIC
SBS	Chr10	2647627	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	12180121	C-T	Hetero	INTERGENIC
SBS	Chr10	16817805	A-G	Hetero	INTERGENIC
SBS	Chr10	17371895	C-A	Hetero	INTERGENIC
SBS	Chr10	18310767	C-T	Homo	UTR_5_PRIME
SBS	Chr10	19538622	G-A	Hetero	INTERGENIC
SBS	Chr11	17077218	C-T	Hetero	INTERGENIC
SBS	Chr12	22295078	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	454034	454040	6
Deletion	Chr2	1886428	1886436	8	OsKitaake02g028900
Deletion	Chr2	4659047	4659048	1
Deletion	Chr7	10240412	10240419	7
Deletion	Chr11	12459798	12459799	1
Deletion	Chr12	15814702	15814717	15
Deletion	Chr1	18207521	18207527	6
Deletion	Chr9	19808975	19808980	5	OsKitaake09g164000
Deletion	Chr3	22268486	22268488	2
Deletion	Chr4	23115115	23115116	1	OsKitaake04g140900
Deletion	Chr2	24802001	24846000	43999	9
Deletion	Chr7	26068939	26068941	2
Deletion	Chr4	35206962	35206978	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18049552	18053587	OsKitaake11g141200
Inversion	Chr11	18049554	18053590	OsKitaake11g141200
Inversion	Chr6	23106865	23107613	OsKitaake06g203600
Inversion	Chr6	23106866	23107621	OsKitaake06g203600
Inversion	Chr1	38162708	38166052
Inversion	Chr1	38162717	38166054

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes