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Mutant Information

Mutant Name	FN1321-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1321-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5168826 G-T Hetero INTERGENIC
SBS Chr1 7996695 G-A Hetero INTERGENIC
SBS Chr1 9180570 C-T Hetero INTERGENIC
SBS Chr1 35887685 C-A Hetero INTERGENIC
SBS Chr1 39102869 C-T Hetero INTRON
SBS Chr2 14733526 G-A Hetero INTERGENIC
SBS Chr2 25973660 G-A Hetero INTERGENIC
SBS Chr2 26175702 C-T Hetero INTERGENIC
SBS Chr3 7137877 T-A Hetero INTRON
SBS Chr3 26187935 C-A Homo INTERGENIC
SBS Chr4 995255 C-T Homo INTERGENIC
SBS Chr4 3593598 C-A Hetero INTERGENIC
SBS Chr4 27745738 C-T Hetero INTRON
SBS Chr4 28976278 C-T Hetero UTR_5_PRIME
SBS Chr4 34425318 G-T Hetero INTERGENIC
SBS Chr4 35676952 T-A Hetero INTERGENIC
SBS Chr5 8779612 C-T Hetero INTERGENIC
SBS Chr6 12636928 G-A Homo INTERGENIC
SBS Chr7 11915230 C-T Hetero INTERGENIC
SBS Chr7 22395999 T-A Hetero INTERGENIC
SBS Chr7 25801417 G-A Hetero INTERGENIC
SBS Chr7 27252328 C-T Hetero INTERGENIC
SBS Chr8 4747869 T-A Homo INTERGENIC
SBS Chr8 4747870 C-A Homo INTERGENIC
SBS Chr9 174425 T-A Hetero INTERGENIC
SBS Chr9 8785969 T-G Hetero INTERGENIC
SBS Chr10 9781800 C-A Homo INTERGENIC
SBS Chr12 27073921 C-T Hetero UTR_3_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1419188 1419190 2
Deletion Chr8 2704318 2704327 9
Deletion Chr8 4199028 4199037 9
Deletion Chr3 9533229 9533244 15
Deletion Chr6 12612151 12612157 6 OsKitaake06g134800
Deletion Chr9 16019557 16019561 4
Deletion Chr4 16162402 16162407 5
Deletion Chr5 17768845 17768853 8
Deletion Chr5 17969147 17969150 3
Deletion Chr3 23771800 23771814 14
Deletion Chr1 25383733 25383734 1
Deletion Chr1 32476001 32633000 156999 21
Deletion Chr1 32762001 32787000 24999 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15050695 15050698 2
Insertion Chr1 9692959 9692961 1
Insertion Chr5 4788774 4788776 1
Insertion Chr5 12532511 12532513 1
Insertion Chr7 22848895 22848898 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 7559049 7559541
Inversion Chr7 7559554 8050389 OsKitaake07g088500
Inversion Chr2 7815974 8374464 OsKitaake02g106550
Inversion Chr7 7994844 8226598 OsKitaake07g088200
Inversion Chr7 7994846 8050217 2
Inversion Chr4 30390872 30391136
Inversion Chr1 32762438 32888416 OsKitaake01g334400

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 335801 Chr1 32888429 OsKitaake01g334400
Translocation Chr9 338778 Chr1 32637843
Translocation Chr3 4083441 Chr1 32637669 OsKitaake03g057901
Translocation Chr3 4083462 Chr1 32635829 OsKitaake03g057901
Translocation Chr2 7815985 Chr1 17429439
Translocation Chr9 15307316 Chr1 32475391 2
Translocation Chr9 15307324 Chr7 21826870 OsKitaake09g107600
Translocation Chr7 21827003 Chr1 32475391 OsKitaake01g328900
Translocation Chr12 23786283 Chr9 15308823 OsKitaake09g107600
Translocation Chr12 23786291 Chr1 32476755 OsKitaake01g328900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5168826	G-T	Hetero	INTERGENIC
SBS	Chr1	7996695	G-A	Hetero	INTERGENIC
SBS	Chr1	9180570	C-T	Hetero	INTERGENIC
SBS	Chr1	35887685	C-A	Hetero	INTERGENIC
SBS	Chr1	39102869	C-T	Hetero	INTRON
SBS	Chr2	14733526	G-A	Hetero	INTERGENIC
SBS	Chr2	25973660	G-A	Hetero	INTERGENIC
SBS	Chr2	26175702	C-T	Hetero	INTERGENIC
SBS	Chr3	7137877	T-A	Hetero	INTRON
SBS	Chr3	26187935	C-A	Homo	INTERGENIC
SBS	Chr4	995255	C-T	Homo	INTERGENIC
SBS	Chr4	3593598	C-A	Hetero	INTERGENIC
SBS	Chr4	27745738	C-T	Hetero	INTRON
SBS	Chr4	28976278	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	34425318	G-T	Hetero	INTERGENIC
SBS	Chr4	35676952	T-A	Hetero	INTERGENIC
SBS	Chr5	8779612	C-T	Hetero	INTERGENIC
SBS	Chr6	12636928	G-A	Homo	INTERGENIC
SBS	Chr7	11915230	C-T	Hetero	INTERGENIC
SBS	Chr7	22395999	T-A	Hetero	INTERGENIC
SBS	Chr7	25801417	G-A	Hetero	INTERGENIC
SBS	Chr7	27252328	C-T	Hetero	INTERGENIC
SBS	Chr8	4747869	T-A	Homo	INTERGENIC
SBS	Chr8	4747870	C-A	Homo	INTERGENIC
SBS	Chr9	174425	T-A	Hetero	INTERGENIC
SBS	Chr9	8785969	T-G	Hetero	INTERGENIC
SBS	Chr10	9781800	C-A	Homo	INTERGENIC
SBS	Chr12	27073921	C-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1419188	1419190	2
Deletion	Chr8	2704318	2704327	9
Deletion	Chr8	4199028	4199037	9
Deletion	Chr3	9533229	9533244	15
Deletion	Chr6	12612151	12612157	6	OsKitaake06g134800
Deletion	Chr9	16019557	16019561	4
Deletion	Chr4	16162402	16162407	5
Deletion	Chr5	17768845	17768853	8
Deletion	Chr5	17969147	17969150	3
Deletion	Chr3	23771800	23771814	14
Deletion	Chr1	25383733	25383734	1
Deletion	Chr1	32476001	32633000	156999	21
Deletion	Chr1	32762001	32787000	24999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7559049	7559541
Inversion	Chr7	7559554	8050389	OsKitaake07g088500
Inversion	Chr2	7815974	8374464	OsKitaake02g106550
Inversion	Chr7	7994844	8226598	OsKitaake07g088200
Inversion	Chr7	7994846	8050217	2
Inversion	Chr4	30390872	30391136
Inversion	Chr1	32762438	32888416	OsKitaake01g334400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes