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Mutant Information

Mutant Name	FN1323-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1323-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (26.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19967843 A-C Hetero INTERGENIC
SBS Chr2 14501478 T-A Hetero INTERGENIC
SBS Chr2 19842182 A-G Homo INTERGENIC
SBS Chr3 8077397 A-G Homo INTRON
SBS Chr3 12756080 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g172000
SBS Chr3 17561403 G-T Homo INTERGENIC
SBS Chr5 613643 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g006600
SBS Chr5 15764591 T-G Hetero INTRON
SBS Chr5 16330692 A-C Hetero INTRON
SBS Chr7 3506702 C-T Hetero INTERGENIC
SBS Chr7 4266783 T-C Hetero INTERGENIC
SBS Chr7 21500041 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 21500042 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 8990916 G-T Homo INTERGENIC
SBS Chr8 14084593 C-G Hetero INTERGENIC
SBS Chr8 18288891 A-T Homo INTERGENIC
SBS Chr8 19776104 C-T Homo INTRON
SBS Chr9 20801380 T-A Hetero INTERGENIC
SBS Chr10 2079525 T-A Homo INTERGENIC
SBS Chr10 2892385 G-A Homo SYNONYMOUS_CODING
SBS Chr10 7364762 A-T Homo INTERGENIC
SBS Chr10 21335960 A-G Homo INTERGENIC
SBS Chr11 6416857 C-T Hetero INTERGENIC
SBS Chr11 27114852 T-C Hetero UTR_5_PRIME

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr4 2717817 2717819 2
Deletion Chr12 2878271 2878291 20
Deletion Chr1 5605197 5605198 1
Deletion Chr8 12823002 12823003 1
Deletion Chr8 14941875 14941879 4
Deletion Chr11 17585142 17585144 2
Deletion Chr5 17947913 17947915 2
Deletion Chr6 23778752 23778754 2 OsKitaake06g209000
Deletion Chr1 31033584 31033588 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 3057509 3057512 2
Insertion Chr5 17866340 17866344 3
Insertion Chr5 30240668 30240670 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13260794 Chr4 9728838

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19967843	A-C	Hetero	INTERGENIC
SBS	Chr2	14501478	T-A	Hetero	INTERGENIC
SBS	Chr2	19842182	A-G	Homo	INTERGENIC
SBS	Chr3	8077397	A-G	Homo	INTRON
SBS	Chr3	12756080	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g172000
SBS	Chr3	17561403	G-T	Homo	INTERGENIC
SBS	Chr5	613643	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g006600
SBS	Chr5	15764591	T-G	Hetero	INTRON
SBS	Chr5	16330692	A-C	Hetero	INTRON
SBS	Chr7	3506702	C-T	Hetero	INTERGENIC
SBS	Chr7	4266783	T-C	Hetero	INTERGENIC
SBS	Chr7	21500041	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	21500042	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8990916	G-T	Homo	INTERGENIC
SBS	Chr8	14084593	C-G	Hetero	INTERGENIC
SBS	Chr8	18288891	A-T	Homo	INTERGENIC
SBS	Chr8	19776104	C-T	Homo	INTRON
SBS	Chr9	20801380	T-A	Hetero	INTERGENIC
SBS	Chr10	2079525	T-A	Homo	INTERGENIC
SBS	Chr10	2892385	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	7364762	A-T	Homo	INTERGENIC
SBS	Chr10	21335960	A-G	Homo	INTERGENIC
SBS	Chr11	6416857	C-T	Hetero	INTERGENIC
SBS	Chr11	27114852	T-C	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr4	2717817	2717819	2
Deletion	Chr12	2878271	2878291	20
Deletion	Chr1	5605197	5605198	1
Deletion	Chr8	12823002	12823003	1
Deletion	Chr8	14941875	14941879	4
Deletion	Chr11	17585142	17585144	2
Deletion	Chr5	17947913	17947915	2
Deletion	Chr6	23778752	23778754	2	OsKitaake06g209000
Deletion	Chr1	31033584	31033588	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13260794	Chr4	9728838

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes