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Mutant Information

Mutant Name	FN1325-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1325-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3354007 T-G Hetero INTERGENIC
SBS Chr1 14549265 C-T Homo INTERGENIC
SBS Chr1 28255507 G-A Homo INTERGENIC
SBS Chr2 36044802 C-A Hetero INTERGENIC
SBS Chr3 1281747 G-C Hetero INTERGENIC
SBS Chr3 33535861 A-G Hetero INTRON
SBS Chr4 27934627 A-G Homo INTERGENIC
SBS Chr4 34653520 A-T Hetero INTERGENIC
SBS Chr4 35549924 G-T Hetero INTERGENIC
SBS Chr5 12184153 A-G Homo INTERGENIC
SBS Chr5 19709607 A-G Hetero INTERGENIC
SBS Chr6 8344432 A-T Hetero INTRON
SBS Chr6 9263984 C-T Hetero INTERGENIC
SBS Chr6 13140120 C-A Hetero INTERGENIC
SBS Chr6 15614673 C-T Hetero INTERGENIC
SBS Chr6 15938990 C-T Hetero INTERGENIC
SBS Chr6 19357091 G-A Hetero INTRON
SBS Chr6 23013122 A-C Hetero INTERGENIC
SBS Chr7 6482615 G-A Homo SYNONYMOUS_CODING
SBS Chr7 25220816 C-T Hetero INTERGENIC
SBS Chr8 9311957 A-T Homo UTR_3_PRIME
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr10 4698646 A-G Hetero INTERGENIC
SBS Chr10 5558560 G-C Hetero INTERGENIC
SBS Chr10 5560078 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g038500
SBS Chr10 8334836 G-A Hetero INTERGENIC
SBS Chr11 6435550 T-A Hetero INTERGENIC
SBS Chr11 6435551 C-T Hetero INTERGENIC
SBS Chr12 2606465 C-T Hetero INTERGENIC
SBS Chr12 25788652 T-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3844803 3844809 6
Deletion Chr9 9874729 9874736 7
Deletion Chr9 12385618 12385620 2 OsKitaake09g080900
Deletion Chr7 15060965 15060966 1
Deletion Chr5 16915276 16915277 1
Deletion Chr7 17483448 17483449 1 OsKitaake07g142100
Deletion Chr3 18787230 18787231 1
Deletion Chr8 19126206 19126211 5
Deletion Chr3 25941349 25941350 1
Deletion Chr1 25985809 25985823 14

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21495425 21495430 4
Insertion Chr3 32406136 32406139 2
Insertion Chr8 5028250 5028255 4
Insertion Chr8 19954741 19954744 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6855123 7378286
Inversion Chr9 10906568 11462217 OsKitaake09g071300
Inversion Chr9 10906585 11462234 OsKitaake09g071300
Inversion Chr3 27620625 27720506 OsKitaake03g286600
Inversion Chr3 27620791 27720524 OsKitaake03g286600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3354007	T-G	Hetero	INTERGENIC
SBS	Chr1	14549265	C-T	Homo	INTERGENIC
SBS	Chr1	28255507	G-A	Homo	INTERGENIC
SBS	Chr2	36044802	C-A	Hetero	INTERGENIC
SBS	Chr3	1281747	G-C	Hetero	INTERGENIC
SBS	Chr3	33535861	A-G	Hetero	INTRON
SBS	Chr4	27934627	A-G	Homo	INTERGENIC
SBS	Chr4	34653520	A-T	Hetero	INTERGENIC
SBS	Chr4	35549924	G-T	Hetero	INTERGENIC
SBS	Chr5	12184153	A-G	Homo	INTERGENIC
SBS	Chr5	19709607	A-G	Hetero	INTERGENIC
SBS	Chr6	8344432	A-T	Hetero	INTRON
SBS	Chr6	9263984	C-T	Hetero	INTERGENIC
SBS	Chr6	13140120	C-A	Hetero	INTERGENIC
SBS	Chr6	15614673	C-T	Hetero	INTERGENIC
SBS	Chr6	15938990	C-T	Hetero	INTERGENIC
SBS	Chr6	19357091	G-A	Hetero	INTRON
SBS	Chr6	23013122	A-C	Hetero	INTERGENIC
SBS	Chr7	6482615	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	25220816	C-T	Hetero	INTERGENIC
SBS	Chr8	9311957	A-T	Homo	UTR_3_PRIME
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr10	4698646	A-G	Hetero	INTERGENIC
SBS	Chr10	5558560	G-C	Hetero	INTERGENIC
SBS	Chr10	5560078	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g038500
SBS	Chr10	8334836	G-A	Hetero	INTERGENIC
SBS	Chr11	6435550	T-A	Hetero	INTERGENIC
SBS	Chr11	6435551	C-T	Hetero	INTERGENIC
SBS	Chr12	2606465	C-T	Hetero	INTERGENIC
SBS	Chr12	25788652	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3844803	3844809	6
Deletion	Chr9	9874729	9874736	7
Deletion	Chr9	12385618	12385620	2	OsKitaake09g080900
Deletion	Chr7	15060965	15060966	1
Deletion	Chr5	16915276	16915277	1
Deletion	Chr7	17483448	17483449	1	OsKitaake07g142100
Deletion	Chr3	18787230	18787231	1
Deletion	Chr8	19126206	19126211	5
Deletion	Chr3	25941349	25941350	1
Deletion	Chr1	25985809	25985823	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6855123	7378286
Inversion	Chr9	10906568	11462217	OsKitaake09g071300
Inversion	Chr9	10906585	11462234	OsKitaake09g071300
Inversion	Chr3	27620625	27720506	OsKitaake03g286600
Inversion	Chr3	27620791	27720524	OsKitaake03g286600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes