Search Kitaake

Mutant Information

Mutant Name	FN1327-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1327-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3247179 G-A Homo INTERGENIC
SBS Chr1 40087046 G-C Homo INTERGENIC
SBS Chr2 5409030 C-A Hetero INTRON
SBS Chr2 9901681 G-A Hetero INTERGENIC
SBS Chr2 33554090 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g346900
SBS Chr3 16754187 G-A Homo INTERGENIC
SBS Chr3 26961209 G-C Hetero INTERGENIC
SBS Chr4 10765109 G-A Hetero INTERGENIC
SBS Chr4 15835072 C-A Hetero INTERGENIC
SBS Chr4 16108496 G-A Hetero INTERGENIC
SBS Chr5 5465658 C-T Hetero INTERGENIC
SBS Chr5 21523065 C-T Hetero INTERGENIC
SBS Chr5 27067505 A-T Hetero UTR_3_PRIME
SBS Chr5 30245039 C-T Hetero INTERGENIC
SBS Chr6 2431030 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g032000
SBS Chr6 30330134 A-G Hetero INTERGENIC
SBS Chr7 4852967 T-A Hetero INTRON
SBS Chr7 5586893 C-T Hetero INTERGENIC
SBS Chr7 19639754 G-A Homo INTERGENIC
SBS Chr8 12966895 C-A Hetero INTERGENIC
SBS Chr8 12966896 A-T Hetero INTERGENIC
SBS Chr8 19074501 T-A Hetero INTRON
SBS Chr9 1299991 A-T Hetero INTERGENIC
SBS Chr9 1748358 A-C Hetero INTERGENIC
SBS Chr9 5525353 C-T Hetero INTERGENIC
SBS Chr9 6176975 T-C Hetero INTRON
SBS Chr9 7526136 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g042700
SBS Chr9 7542043 G-C Hetero INTRON
SBS Chr9 9691226 A-G Hetero INTRON
SBS Chr9 9697512 C-T Hetero INTRON
SBS Chr9 10170304 A-G Hetero INTERGENIC
SBS Chr9 10397626 C-T Hetero INTERGENIC
SBS Chr9 18446869 A-T Homo INTERGENIC
SBS Chr10 2108969 A-C Homo INTERGENIC
SBS Chr10 12889771 T-C Hetero INTERGENIC
SBS Chr11 14432361 G-A Hetero INTERGENIC
SBS Chr11 16334527 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g130001
SBS Chr12 5010390 A-G Hetero INTERGENIC
SBS Chr12 8130719 A-G Hetero INTERGENIC
SBS Chr12 9275874 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1272719 1272720 1
Deletion Chr6 2472001 2569000 96999 19
Deletion Chr7 4821482 4821483 1
Deletion Chr11 5831927 5832153 226
Deletion Chr1 8918473 8918477 4
Deletion Chr9 9635001 9649000 13999 2
Deletion Chr11 14524720 14524722 2
Deletion Chr5 15075242 15075250 8
Deletion Chr6 16022001 16092000 69999 8
Deletion Chr6 17009001 17065000 55999 3
Deletion Chr8 17078392 17078398 6
Deletion Chr8 17707999 17708001 2
Deletion Chr4 17722892 17722893 1
Deletion Chr9 20094266 20094267 1 OsKitaake09g168000
Deletion Chr8 21096383 21096391 8
Deletion Chr3 25853083 25853091 8
Deletion Chr11 26230861 26230876 15
Deletion Chr3 26819874 26819876 2
Deletion Chr1 34410287 34410288 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 17861161 17861164 2
Insertion Chr9 20392880 20392884 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5598291 5655809
Inversion Chr3 24481609 24578191 OsKitaake03g261600
Inversion Chr3 24501907 24578179

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5560370 Chr1 39337964 OsKitaake01g423900
Translocation Chr7 5569564 Chr1 39337941 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3247179	G-A	Homo	INTERGENIC
SBS	Chr1	40087046	G-C	Homo	INTERGENIC
SBS	Chr2	5409030	C-A	Hetero	INTRON
SBS	Chr2	9901681	G-A	Hetero	INTERGENIC
SBS	Chr2	33554090	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g346900
SBS	Chr3	16754187	G-A	Homo	INTERGENIC
SBS	Chr3	26961209	G-C	Hetero	INTERGENIC
SBS	Chr4	10765109	G-A	Hetero	INTERGENIC
SBS	Chr4	15835072	C-A	Hetero	INTERGENIC
SBS	Chr4	16108496	G-A	Hetero	INTERGENIC
SBS	Chr5	5465658	C-T	Hetero	INTERGENIC
SBS	Chr5	21523065	C-T	Hetero	INTERGENIC
SBS	Chr5	27067505	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	30245039	C-T	Hetero	INTERGENIC
SBS	Chr6	2431030	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g032000
SBS	Chr6	30330134	A-G	Hetero	INTERGENIC
SBS	Chr7	4852967	T-A	Hetero	INTRON
SBS	Chr7	5586893	C-T	Hetero	INTERGENIC
SBS	Chr7	19639754	G-A	Homo	INTERGENIC
SBS	Chr8	12966895	C-A	Hetero	INTERGENIC
SBS	Chr8	12966896	A-T	Hetero	INTERGENIC
SBS	Chr8	19074501	T-A	Hetero	INTRON
SBS	Chr9	1299991	A-T	Hetero	INTERGENIC
SBS	Chr9	1748358	A-C	Hetero	INTERGENIC
SBS	Chr9	5525353	C-T	Hetero	INTERGENIC
SBS	Chr9	6176975	T-C	Hetero	INTRON
SBS	Chr9	7526136	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g042700
SBS	Chr9	7542043	G-C	Hetero	INTRON
SBS	Chr9	9691226	A-G	Hetero	INTRON
SBS	Chr9	9697512	C-T	Hetero	INTRON
SBS	Chr9	10170304	A-G	Hetero	INTERGENIC
SBS	Chr9	10397626	C-T	Hetero	INTERGENIC
SBS	Chr9	18446869	A-T	Homo	INTERGENIC
SBS	Chr10	2108969	A-C	Homo	INTERGENIC
SBS	Chr10	12889771	T-C	Hetero	INTERGENIC
SBS	Chr11	14432361	G-A	Hetero	INTERGENIC
SBS	Chr11	16334527	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g130001
SBS	Chr12	5010390	A-G	Hetero	INTERGENIC
SBS	Chr12	8130719	A-G	Hetero	INTERGENIC
SBS	Chr12	9275874	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1272719	1272720	1
Deletion	Chr6	2472001	2569000	96999	19
Deletion	Chr7	4821482	4821483	1
Deletion	Chr11	5831927	5832153	226
Deletion	Chr1	8918473	8918477	4
Deletion	Chr9	9635001	9649000	13999	2
Deletion	Chr11	14524720	14524722	2
Deletion	Chr5	15075242	15075250	8
Deletion	Chr6	16022001	16092000	69999	8
Deletion	Chr6	17009001	17065000	55999	3
Deletion	Chr8	17078392	17078398	6
Deletion	Chr8	17707999	17708001	2
Deletion	Chr4	17722892	17722893	1
Deletion	Chr9	20094266	20094267	1	OsKitaake09g168000
Deletion	Chr8	21096383	21096391	8
Deletion	Chr3	25853083	25853091	8
Deletion	Chr11	26230861	26230876	15
Deletion	Chr3	26819874	26819876	2
Deletion	Chr1	34410287	34410288	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5598291	5655809
Inversion	Chr3	24481609	24578191	OsKitaake03g261600
Inversion	Chr3	24501907	24578179

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes