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Mutant Information

Mutant Name	FN1330-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1330-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29096036 C-A Hetero INTERGENIC
SBS Chr1 30431432 A-T Hetero INTERGENIC
SBS Chr1 38186790 T-G Homo INTRON
SBS Chr2 3066041 G-A Hetero INTERGENIC
SBS Chr2 6313568 T-C Hetero INTERGENIC
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr2 33164195 T-C Homo INTRON
SBS Chr2 36562975 T-C Hetero INTRON
SBS Chr3 27442794 A-T Hetero INTERGENIC
SBS Chr4 895978 C-T Homo INTERGENIC
SBS Chr4 2169043 C-G Hetero INTERGENIC
SBS Chr4 2252127 C-T Hetero INTERGENIC
SBS Chr4 11270936 G-T Hetero INTERGENIC
SBS Chr4 26752119 T-C Hetero INTERGENIC
SBS Chr4 29224749 A-G Hetero UTR_5_PRIME
SBS Chr5 1299961 A-T Homo INTERGENIC
SBS Chr5 5834192 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g062200
SBS Chr5 15126616 G-A Hetero INTERGENIC
SBS Chr5 28744005 G-T Hetero INTERGENIC
SBS Chr5 29036079 A-G Hetero UTR_5_PRIME
SBS Chr6 4103542 T-A Homo INTRON
SBS Chr6 12452768 A-C Homo UTR_3_PRIME
SBS Chr6 26035835 G-A Hetero INTERGENIC
SBS Chr6 26634982 T-C Hetero INTERGENIC
SBS Chr6 27564805 T-C Hetero INTERGENIC
SBS Chr6 29173781 C-T Hetero INTERGENIC
SBS Chr6 30584450 A-C Hetero INTERGENIC
SBS Chr8 9622066 G-T Hetero INTERGENIC
SBS Chr8 10820042 C-T Homo INTERGENIC
SBS Chr8 18851417 G-A Hetero INTERGENIC
SBS Chr9 14428815 T-C Hetero INTERGENIC
SBS Chr9 18096493 G-A Hetero INTERGENIC
SBS Chr10 2086808 G-C Hetero INTERGENIC
SBS Chr10 7898502 T-A Homo INTERGENIC
SBS Chr10 23024509 A-G Homo INTERGENIC
SBS Chr10 23613762 T-A Homo INTERGENIC
SBS Chr11 6156563 T-A Homo INTERGENIC
SBS Chr11 9297796 A-T Homo INTERGENIC
SBS Chr11 13997955 A-G Hetero INTERGENIC
SBS Chr11 15609709 A-G Hetero INTRON
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 563145 563212 67
Deletion Chr6 1021264 1021267 3
Deletion Chr6 1037920 1037921 1
Deletion Chr11 4131257 4131267 10
Deletion Chr10 5135594 5135596 2
Deletion Chr7 7808674 7808682 8
Deletion Chr11 8670291 8670292 1
Deletion Chr6 8700723 8700736 13
Deletion Chr1 18319526 18319528 2
Deletion Chr10 18458269 18458273 4
Deletion Chr1 19150673 19150675 2
Deletion Chr7 19252260 19252262 2
Deletion Chr2 19508320 19508330 10
Deletion Chr1 21869485 21869486 1
Deletion Chr1 24639318 24639320 2
Deletion Chr12 25296052 25296058 6
Deletion Chr4 25912071 25912080 9
Deletion Chr3 30734703 30734707 4 OsKitaake03g323000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22073080 22073083 2
Insertion Chr9 22129302 22129305 2
Insertion Chr11 24049691 24049694 2
Insertion Chr6 10871159 10871162 2 OsKitaake06g121250

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10291080 11075798
Inversion Chr8 10303520 11075811

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1561209 Chr3 33958110 OsKitaake03g366500
Translocation Chr10 1742688 Chr3 33957720 OsKitaake03g366500
Translocation Chr5 28799550 Chr3 33957720 OsKitaake03g366500
Translocation Chr5 28799552 Chr3 33958104 OsKitaake03g366500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29096036	C-A	Hetero	INTERGENIC
SBS	Chr1	30431432	A-T	Hetero	INTERGENIC
SBS	Chr1	38186790	T-G	Homo	INTRON
SBS	Chr2	3066041	G-A	Hetero	INTERGENIC
SBS	Chr2	6313568	T-C	Hetero	INTERGENIC
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr2	33164195	T-C	Homo	INTRON
SBS	Chr2	36562975	T-C	Hetero	INTRON
SBS	Chr3	27442794	A-T	Hetero	INTERGENIC
SBS	Chr4	895978	C-T	Homo	INTERGENIC
SBS	Chr4	2169043	C-G	Hetero	INTERGENIC
SBS	Chr4	2252127	C-T	Hetero	INTERGENIC
SBS	Chr4	11270936	G-T	Hetero	INTERGENIC
SBS	Chr4	26752119	T-C	Hetero	INTERGENIC
SBS	Chr4	29224749	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	1299961	A-T	Homo	INTERGENIC
SBS	Chr5	5834192	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g062200
SBS	Chr5	15126616	G-A	Hetero	INTERGENIC
SBS	Chr5	28744005	G-T	Hetero	INTERGENIC
SBS	Chr5	29036079	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	4103542	T-A	Homo	INTRON
SBS	Chr6	12452768	A-C	Homo	UTR_3_PRIME
SBS	Chr6	26035835	G-A	Hetero	INTERGENIC
SBS	Chr6	26634982	T-C	Hetero	INTERGENIC
SBS	Chr6	27564805	T-C	Hetero	INTERGENIC
SBS	Chr6	29173781	C-T	Hetero	INTERGENIC
SBS	Chr6	30584450	A-C	Hetero	INTERGENIC
SBS	Chr8	9622066	G-T	Hetero	INTERGENIC
SBS	Chr8	10820042	C-T	Homo	INTERGENIC
SBS	Chr8	18851417	G-A	Hetero	INTERGENIC
SBS	Chr9	14428815	T-C	Hetero	INTERGENIC
SBS	Chr9	18096493	G-A	Hetero	INTERGENIC
SBS	Chr10	2086808	G-C	Hetero	INTERGENIC
SBS	Chr10	7898502	T-A	Homo	INTERGENIC
SBS	Chr10	23024509	A-G	Homo	INTERGENIC
SBS	Chr10	23613762	T-A	Homo	INTERGENIC
SBS	Chr11	6156563	T-A	Homo	INTERGENIC
SBS	Chr11	9297796	A-T	Homo	INTERGENIC
SBS	Chr11	13997955	A-G	Hetero	INTERGENIC
SBS	Chr11	15609709	A-G	Hetero	INTRON
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	563145	563212	67
Deletion	Chr6	1021264	1021267	3
Deletion	Chr6	1037920	1037921	1
Deletion	Chr11	4131257	4131267	10
Deletion	Chr10	5135594	5135596	2
Deletion	Chr7	7808674	7808682	8
Deletion	Chr11	8670291	8670292	1
Deletion	Chr6	8700723	8700736	13
Deletion	Chr1	18319526	18319528	2
Deletion	Chr10	18458269	18458273	4
Deletion	Chr1	19150673	19150675	2
Deletion	Chr7	19252260	19252262	2
Deletion	Chr2	19508320	19508330	10
Deletion	Chr1	21869485	21869486	1
Deletion	Chr1	24639318	24639320	2
Deletion	Chr12	25296052	25296058	6
Deletion	Chr4	25912071	25912080	9
Deletion	Chr3	30734703	30734707	4	OsKitaake03g323000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10291080	11075798
Inversion	Chr8	10303520	11075811

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes