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Mutant Information

Mutant Name	FN1332-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1332-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1804836 A-C Homo INTERGENIC
SBS Chr1 21094534 T-A Hetero INTERGENIC
SBS Chr1 21947718 G-A Hetero INTERGENIC
SBS Chr1 30013876 C-T Hetero INTERGENIC
SBS Chr2 2787439 A-G Homo INTRON
SBS Chr2 13941275 G-A Hetero INTERGENIC
SBS Chr2 20648847 G-A Homo INTERGENIC
SBS Chr3 6189497 A-C Homo UTR_5_PRIME
SBS Chr3 6189498 T-C Homo UTR_5_PRIME
SBS Chr3 24429936 C-A Hetero INTERGENIC
SBS Chr4 16968217 G-A Homo INTERGENIC
SBS Chr4 25070421 A-T Hetero INTERGENIC
SBS Chr4 31143158 C-G Homo INTERGENIC
SBS Chr4 36939115 C-T Hetero INTERGENIC
SBS Chr5 5220523 G-A Homo INTERGENIC
SBS Chr5 5220526 C-A Homo INTERGENIC
SBS Chr5 8361287 G-A Homo INTERGENIC
SBS Chr5 20919993 A-G Hetero INTERGENIC
SBS Chr5 24863311 A-G Hetero INTERGENIC
SBS Chr6 6204088 A-G Homo INTRON
SBS Chr6 8451539 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g105300
SBS Chr7 11482573 T-C Hetero INTRON
SBS Chr7 15830787 G-C Hetero INTERGENIC
SBS Chr7 18106203 G-A Hetero INTRON
SBS Chr8 6568185 T-A Homo INTERGENIC
SBS Chr8 13269226 G-A Homo INTRON
SBS Chr8 21083836 A-G Hetero INTERGENIC
SBS Chr8 21083837 C-T Hetero INTERGENIC
SBS Chr8 23510666 A-G Hetero UTR_3_PRIME
SBS Chr9 9475773 C-T Homo INTERGENIC
SBS Chr9 13968543 G-A Hetero INTERGENIC
SBS Chr11 7002109 A-G Homo INTRON
SBS Chr11 9512345 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g099600
SBS Chr11 10832709 C-T Hetero INTERGENIC
SBS Chr11 18615238 C-A Homo UTR_5_PRIME
SBS Chr12 4676785 C-T Hetero INTERGENIC
SBS Chr12 6975515 C-T Hetero UTR_5_PRIME
SBS Chr12 18782728 C-T Hetero INTERGENIC
SBS Chr12 18782729 A-T Hetero INTERGENIC
SBS Chr12 19087348 C-T Hetero UTR_3_PRIME
SBS Chr12 20775707 C-A Hetero INTERGENIC
SBS Chr12 21843347 C-T Hetero INTERGENIC
SBS Chr12 26662899 T-C Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 309693 309712 19 OsKitaake05g004400
Deletion Chr2 1968943 1968949 6
Deletion Chr7 2471062 2471069 7
Deletion Chr1 4325247 4325248 1 OsKitaake01g057600
Deletion Chr1 6280225 6280229 4
Deletion Chr8 16174019 16174023 4
Deletion Chr11 19389853 19389856 3
Deletion Chr1 20622001 20710000 87999 20
Deletion Chr1 20714001 20751000 36999 5
Deletion Chr6 22052144 22052146 2 OsKitaake06g194200
Deletion Chr9 22578001 22587000 8999 3
Deletion Chr2 26641001 26695000 53999 7
Deletion Chr1 26693200 26693221 21
Deletion Chr11 28291512 28291520 8
Deletion Chr1 39042627 39042635 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26704184 26704187 2
Insertion Chr7 4036415 4036418 2
Insertion Chr8 16954709 16954712 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 23603295 23652152
Inversion Chr11 23603299 23652174

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4279316 Chr1 7132201 OsKitaake03g061200
Translocation Chr3 4280132 Chr1 7132198 OsKitaake03g061200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1804836	A-C	Homo	INTERGENIC
SBS	Chr1	21094534	T-A	Hetero	INTERGENIC
SBS	Chr1	21947718	G-A	Hetero	INTERGENIC
SBS	Chr1	30013876	C-T	Hetero	INTERGENIC
SBS	Chr2	2787439	A-G	Homo	INTRON
SBS	Chr2	13941275	G-A	Hetero	INTERGENIC
SBS	Chr2	20648847	G-A	Homo	INTERGENIC
SBS	Chr3	6189497	A-C	Homo	UTR_5_PRIME
SBS	Chr3	6189498	T-C	Homo	UTR_5_PRIME
SBS	Chr3	24429936	C-A	Hetero	INTERGENIC
SBS	Chr4	16968217	G-A	Homo	INTERGENIC
SBS	Chr4	25070421	A-T	Hetero	INTERGENIC
SBS	Chr4	31143158	C-G	Homo	INTERGENIC
SBS	Chr4	36939115	C-T	Hetero	INTERGENIC
SBS	Chr5	5220523	G-A	Homo	INTERGENIC
SBS	Chr5	5220526	C-A	Homo	INTERGENIC
SBS	Chr5	8361287	G-A	Homo	INTERGENIC
SBS	Chr5	20919993	A-G	Hetero	INTERGENIC
SBS	Chr5	24863311	A-G	Hetero	INTERGENIC
SBS	Chr6	6204088	A-G	Homo	INTRON
SBS	Chr6	8451539	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g105300
SBS	Chr7	11482573	T-C	Hetero	INTRON
SBS	Chr7	15830787	G-C	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Hetero	INTRON
SBS	Chr8	6568185	T-A	Homo	INTERGENIC
SBS	Chr8	13269226	G-A	Homo	INTRON
SBS	Chr8	21083836	A-G	Hetero	INTERGENIC
SBS	Chr8	21083837	C-T	Hetero	INTERGENIC
SBS	Chr8	23510666	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	9475773	C-T	Homo	INTERGENIC
SBS	Chr9	13968543	G-A	Hetero	INTERGENIC
SBS	Chr11	7002109	A-G	Homo	INTRON
SBS	Chr11	9512345	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g099600
SBS	Chr11	10832709	C-T	Hetero	INTERGENIC
SBS	Chr11	18615238	C-A	Homo	UTR_5_PRIME
SBS	Chr12	4676785	C-T	Hetero	INTERGENIC
SBS	Chr12	6975515	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	18782728	C-T	Hetero	INTERGENIC
SBS	Chr12	18782729	A-T	Hetero	INTERGENIC
SBS	Chr12	19087348	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	20775707	C-A	Hetero	INTERGENIC
SBS	Chr12	21843347	C-T	Hetero	INTERGENIC
SBS	Chr12	26662899	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	309693	309712	19	OsKitaake05g004400
Deletion	Chr2	1968943	1968949	6
Deletion	Chr7	2471062	2471069	7
Deletion	Chr1	4325247	4325248	1	OsKitaake01g057600
Deletion	Chr1	6280225	6280229	4
Deletion	Chr8	16174019	16174023	4
Deletion	Chr11	19389853	19389856	3
Deletion	Chr1	20622001	20710000	87999	20
Deletion	Chr1	20714001	20751000	36999	5
Deletion	Chr6	22052144	22052146	2	OsKitaake06g194200
Deletion	Chr9	22578001	22587000	8999	3
Deletion	Chr2	26641001	26695000	53999	7
Deletion	Chr1	26693200	26693221	21
Deletion	Chr11	28291512	28291520	8
Deletion	Chr1	39042627	39042635	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	23603295	23652152
Inversion	Chr11	23603299	23652174

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes