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Mutant Information

Mutant Name	FN1337-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1337-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6366428 C-G Hetero INTERGENIC
SBS Chr1 6929037 G-T Hetero INTERGENIC
SBS Chr1 13635106 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g158600
SBS Chr1 21027253 C-T Homo INTERGENIC
SBS Chr1 32644235 C-T Hetero INTERGENIC
SBS Chr2 8323211 A-G Homo INTERGENIC
SBS Chr2 21127190 T-A Hetero INTERGENIC
SBS Chr2 28482957 G-A Homo INTERGENIC
SBS Chr2 31738000 T-A Homo INTERGENIC
SBS Chr2 36970754 A-T Homo INTERGENIC
SBS Chr3 16343507 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 19223374 A-G Hetero INTERGENIC
SBS Chr4 3103620 G-C Homo INTERGENIC
SBS Chr4 3531326 A-G Homo INTERGENIC
SBS Chr4 4292850 T-C Homo INTERGENIC
SBS Chr5 27542203 G-A Hetero INTERGENIC
SBS Chr6 3961541 G-T Hetero INTERGENIC
SBS Chr6 9160405 C-T Homo INTRON
SBS Chr6 9160406 C-T Homo INTRON
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 20443111 G-T Homo INTERGENIC
SBS Chr7 11935820 G-A Hetero INTERGENIC
SBS Chr7 13069281 C-T Hetero INTERGENIC
SBS Chr7 29034575 G-T Hetero INTERGENIC
SBS Chr8 1066945 T-C Homo INTERGENIC
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 16422706 C-T Hetero INTERGENIC
SBS Chr9 1335195 T-A Hetero INTERGENIC
SBS Chr9 4418446 A-T Hetero INTERGENIC
SBS Chr9 12971152 C-G Hetero INTERGENIC
SBS Chr10 13104923 C-T Hetero INTERGENIC
SBS Chr10 21747500 G-A Homo INTERGENIC
SBS Chr11 8472934 C-A Homo INTERGENIC
SBS Chr11 27385051 G-T Hetero INTERGENIC
SBS Chr12 5883198 C-T Homo INTERGENIC
SBS Chr12 5883200 A-T Homo INTERGENIC
SBS Chr12 15338847 T-C Hetero INTERGENIC
SBS Chr12 19618793 G-A Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 22561 22562 1
Deletion Chr10 1350267 1350286 19
Deletion Chr6 1695085 1695093 8
Deletion Chr9 1797036 1797037 1
Deletion Chr1 3866420 3866422 2
Deletion Chr4 5129114 5129117 3
Deletion Chr5 6642126 6642131 5
Deletion Chr1 7370202 7370207 5
Deletion Chr12 7632059 7632065 6
Deletion Chr11 8647328 8647330 2
Deletion Chr3 10747996 10747997 1
Deletion Chr4 11426998 11427010 12
Deletion Chr11 12011508 12011510 2
Deletion Chr11 12751877 12751878 1
Deletion Chr9 14229001 14243000 13999 OsKitaake09g095800
Deletion Chr2 21174064 21174066 2
Deletion Chr3 21401857 21401859 2
Deletion Chr3 22789206 22789207 1
Deletion Chr2 29799286 29799297 11
Deletion Chr1 30451036 30451041 5 OsKitaake01g301100
Deletion Chr3 34279538 34279539 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 14428625 14428628 2
Insertion Chr4 26522879 26522882 2
Insertion Chr6 16463114 16463121 6
Insertion Chr11 20168983 20168986 2
Insertion Chr12 19618778 19618785 6
Insertion Chr5 30228616 30228624 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 13220194 13226107
Inversion Chr9 13220221 13226112
Inversion Chr9 17078310 17350384
Inversion Chr9 17078318 17350384

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9351597 Chr3 30325629 OsKitaake11g097900
Translocation Chr11 9352668 Chr3 30325626 OsKitaake11g097900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6366428	C-G	Hetero	INTERGENIC
SBS	Chr1	6929037	G-T	Hetero	INTERGENIC
SBS	Chr1	13635106	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g158600
SBS	Chr1	21027253	C-T	Homo	INTERGENIC
SBS	Chr1	32644235	C-T	Hetero	INTERGENIC
SBS	Chr2	8323211	A-G	Homo	INTERGENIC
SBS	Chr2	21127190	T-A	Hetero	INTERGENIC
SBS	Chr2	28482957	G-A	Homo	INTERGENIC
SBS	Chr2	31738000	T-A	Homo	INTERGENIC
SBS	Chr2	36970754	A-T	Homo	INTERGENIC
SBS	Chr3	16343507	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	19223374	A-G	Hetero	INTERGENIC
SBS	Chr4	3103620	G-C	Homo	INTERGENIC
SBS	Chr4	3531326	A-G	Homo	INTERGENIC
SBS	Chr4	4292850	T-C	Homo	INTERGENIC
SBS	Chr5	27542203	G-A	Hetero	INTERGENIC
SBS	Chr6	3961541	G-T	Hetero	INTERGENIC
SBS	Chr6	9160405	C-T	Homo	INTRON
SBS	Chr6	9160406	C-T	Homo	INTRON
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	20443111	G-T	Homo	INTERGENIC
SBS	Chr7	11935820	G-A	Hetero	INTERGENIC
SBS	Chr7	13069281	C-T	Hetero	INTERGENIC
SBS	Chr7	29034575	G-T	Hetero	INTERGENIC
SBS	Chr8	1066945	T-C	Homo	INTERGENIC
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	16422706	C-T	Hetero	INTERGENIC
SBS	Chr9	1335195	T-A	Hetero	INTERGENIC
SBS	Chr9	4418446	A-T	Hetero	INTERGENIC
SBS	Chr9	12971152	C-G	Hetero	INTERGENIC
SBS	Chr10	13104923	C-T	Hetero	INTERGENIC
SBS	Chr10	21747500	G-A	Homo	INTERGENIC
SBS	Chr11	8472934	C-A	Homo	INTERGENIC
SBS	Chr11	27385051	G-T	Hetero	INTERGENIC
SBS	Chr12	5883198	C-T	Homo	INTERGENIC
SBS	Chr12	5883200	A-T	Homo	INTERGENIC
SBS	Chr12	15338847	T-C	Hetero	INTERGENIC
SBS	Chr12	19618793	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	22561	22562	1
Deletion	Chr10	1350267	1350286	19
Deletion	Chr6	1695085	1695093	8
Deletion	Chr9	1797036	1797037	1
Deletion	Chr1	3866420	3866422	2
Deletion	Chr4	5129114	5129117	3
Deletion	Chr5	6642126	6642131	5
Deletion	Chr1	7370202	7370207	5
Deletion	Chr12	7632059	7632065	6
Deletion	Chr11	8647328	8647330	2
Deletion	Chr3	10747996	10747997	1
Deletion	Chr4	11426998	11427010	12
Deletion	Chr11	12011508	12011510	2
Deletion	Chr11	12751877	12751878	1
Deletion	Chr9	14229001	14243000	13999	OsKitaake09g095800
Deletion	Chr2	21174064	21174066	2
Deletion	Chr3	21401857	21401859	2
Deletion	Chr3	22789206	22789207	1
Deletion	Chr2	29799286	29799297	11
Deletion	Chr1	30451036	30451041	5	OsKitaake01g301100
Deletion	Chr3	34279538	34279539	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13220194	13226107
Inversion	Chr9	13220221	13226112
Inversion	Chr9	17078310	17350384
Inversion	Chr9	17078318	17350384

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes