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Mutant Information

Mutant Name	FN1344-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1344-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14170595 A-C Hetero INTERGENIC
SBS Chr1 14372126 T-A Hetero INTERGENIC
SBS Chr1 14372127 T-A Hetero INTERGENIC
SBS Chr1 20926571 C-T Hetero INTERGENIC
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr2 14433722 C-A Hetero INTERGENIC
SBS Chr2 34772985 A-C Hetero UTR_3_PRIME
SBS Chr3 4074321 G-A Hetero INTERGENIC
SBS Chr3 7807560 G-A Homo INTERGENIC
SBS Chr3 17571829 C-G Homo INTERGENIC
SBS Chr3 19105757 G-C Hetero INTERGENIC
SBS Chr3 20924794 C-T Hetero INTERGENIC
SBS Chr3 22124289 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g241432
SBS Chr3 22124290 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g241432
SBS Chr4 7349352 C-T Hetero INTERGENIC
SBS Chr4 28337081 C-T Hetero INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 8027106 G-T Hetero UTR_5_PRIME
SBS Chr5 9256912 G-T Hetero INTRON
SBS Chr5 16269384 G-A Hetero INTERGENIC
SBS Chr6 4463945 C-T Hetero INTERGENIC
SBS Chr6 9409036 C-T Hetero INTERGENIC
SBS Chr7 7546853 G-A Hetero INTERGENIC
SBS Chr7 19612647 G-T Hetero INTERGENIC
SBS Chr8 28630735 A-T Hetero INTERGENIC
SBS Chr9 2777316 G-C Hetero INTERGENIC
SBS Chr9 18669853 T-A Homo INTERGENIC
SBS Chr10 5155975 G-A Homo INTERGENIC
SBS Chr10 15824216 C-A Homo INTERGENIC
SBS Chr11 13650076 C-T Homo INTERGENIC
SBS Chr12 2866591 T-C Hetero INTRON
SBS Chr12 5809869 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g070200
SBS Chr12 15027346 C-T Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4073699 4073706 7
Deletion Chr5 6599818 6599820 2
Deletion Chr2 8119694 8119695 1
Deletion Chr12 9048949 9048952 3
Deletion Chr5 14213718 14213720 2
Deletion Chr3 15146426 15146427 1 OsKitaake03g196300
Deletion Chr9 17468235 17468237 2 OsKitaake09g131200
Deletion Chr6 20418510 20418514 4
Deletion Chr9 20981852 20981858 6
Deletion Chr1 22725741 22725742 1
Deletion Chr8 28506548 28506550 2
Deletion Chr1 42425814 42425818 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 1612759 1612762 2
Insertion Chr12 2982889 2982894 4
Insertion Chr12 19828679 19828682 2
Insertion Chr4 16857457 16857459 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2802294 2805532 2
Inversion Chr12 2802297 2805539 2
Inversion Chr4 3560116 4090300
Inversion Chr12 5622314 5813207
Inversion Chr12 5622318 5813491

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2069293 Chr1 38078638
Translocation Chr11 2069457 Chr1 30598032
Translocation Chr12 5813209 Chr6 29287121
Translocation Chr12 5813479 Chr6 29287116
Translocation Chr10 6378901 Chr3 26727763
Translocation Chr10 6379457 Chr3 26727764

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14170595	A-C	Hetero	INTERGENIC
SBS	Chr1	14372126	T-A	Hetero	INTERGENIC
SBS	Chr1	14372127	T-A	Hetero	INTERGENIC
SBS	Chr1	20926571	C-T	Hetero	INTERGENIC
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr2	14433722	C-A	Hetero	INTERGENIC
SBS	Chr2	34772985	A-C	Hetero	UTR_3_PRIME
SBS	Chr3	4074321	G-A	Hetero	INTERGENIC
SBS	Chr3	7807560	G-A	Homo	INTERGENIC
SBS	Chr3	17571829	C-G	Homo	INTERGENIC
SBS	Chr3	19105757	G-C	Hetero	INTERGENIC
SBS	Chr3	20924794	C-T	Hetero	INTERGENIC
SBS	Chr3	22124289	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241432
SBS	Chr3	22124290	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241432
SBS	Chr4	7349352	C-T	Hetero	INTERGENIC
SBS	Chr4	28337081	C-T	Hetero	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	8027106	G-T	Hetero	UTR_5_PRIME
SBS	Chr5	9256912	G-T	Hetero	INTRON
SBS	Chr5	16269384	G-A	Hetero	INTERGENIC
SBS	Chr6	4463945	C-T	Hetero	INTERGENIC
SBS	Chr6	9409036	C-T	Hetero	INTERGENIC
SBS	Chr7	7546853	G-A	Hetero	INTERGENIC
SBS	Chr7	19612647	G-T	Hetero	INTERGENIC
SBS	Chr8	28630735	A-T	Hetero	INTERGENIC
SBS	Chr9	2777316	G-C	Hetero	INTERGENIC
SBS	Chr9	18669853	T-A	Homo	INTERGENIC
SBS	Chr10	5155975	G-A	Homo	INTERGENIC
SBS	Chr10	15824216	C-A	Homo	INTERGENIC
SBS	Chr11	13650076	C-T	Homo	INTERGENIC
SBS	Chr12	2866591	T-C	Hetero	INTRON
SBS	Chr12	5809869	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g070200
SBS	Chr12	15027346	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4073699	4073706	7
Deletion	Chr5	6599818	6599820	2
Deletion	Chr2	8119694	8119695	1
Deletion	Chr12	9048949	9048952	3
Deletion	Chr5	14213718	14213720	2
Deletion	Chr3	15146426	15146427	1	OsKitaake03g196300
Deletion	Chr9	17468235	17468237	2	OsKitaake09g131200
Deletion	Chr6	20418510	20418514	4
Deletion	Chr9	20981852	20981858	6
Deletion	Chr1	22725741	22725742	1
Deletion	Chr8	28506548	28506550	2
Deletion	Chr1	42425814	42425818	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2802294	2805532	2
Inversion	Chr12	2802297	2805539	2
Inversion	Chr4	3560116	4090300
Inversion	Chr12	5622314	5813207
Inversion	Chr12	5622318	5813491

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes