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Mutant Information

Mutant Name	FN1345-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1345-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7007678 G-A Hetero INTERGENIC
SBS Chr2 8694889 G-T Hetero INTERGENIC
SBS Chr2 8762523 A-T Hetero INTERGENIC
SBS Chr2 9193489 T-A Hetero UTR_3_PRIME
SBS Chr2 23599803 G-T Homo UTR_3_PRIME
SBS Chr2 23641488 C-T Homo INTRON
SBS Chr2 28812075 G-A Homo INTERGENIC
SBS Chr2 34466288 T-G Hetero INTERGENIC
SBS Chr2 35651332 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g375000
SBS Chr2 35855972 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g377500
SBS Chr3 19492471 C-A Hetero INTERGENIC
SBS Chr3 19492472 T-A Hetero INTERGENIC
SBS Chr3 33613747 C-T Homo INTERGENIC
SBS Chr3 37121315 C-T Homo SYNONYMOUS_CODING
SBS Chr4 18484183 A-T Hetero INTERGENIC
SBS Chr4 20511961 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 22638383 G-A Hetero INTERGENIC
SBS Chr4 33025782 T-A Homo INTERGENIC
SBS Chr5 17164113 A-T Hetero INTERGENIC
SBS Chr5 19642746 G-C Hetero INTERGENIC
SBS Chr6 13110552 T-A Homo INTERGENIC
SBS Chr6 28658605 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g263600
SBS Chr7 9822930 C-A Homo INTERGENIC
SBS Chr8 8785853 C-T Hetero INTERGENIC
SBS Chr8 16391696 C-T Homo INTERGENIC
SBS Chr8 18018930 C-T Homo INTERGENIC
SBS Chr8 24165239 T-G Hetero INTRON
SBS Chr8 24678341 G-T Hetero INTERGENIC
SBS Chr8 26470296 A-C Hetero INTRON
SBS Chr8 26470297 G-C Hetero INTRON
SBS Chr9 9263132 C-T Hetero INTERGENIC
SBS Chr9 19522128 G-C Homo INTERGENIC
SBS Chr9 20624065 T-A Hetero INTERGENIC
SBS Chr10 8455822 C-T Homo INTERGENIC
SBS Chr11 6539858 T-C Hetero INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 114567 114569 2
Deletion Chr8 2242702 2242713 11
Deletion Chr9 6261955 6261957 2
Deletion Chr8 8555746 8555748 2
Deletion Chr2 18887135 18887136 1 OsKitaake02g185101
Deletion Chr1 18972272 18972281 9
Deletion Chr7 20575326 20575328 2
Deletion Chr6 28646253 28646256 3
Deletion Chr3 29614295 29614297 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6205447 6205452 4
Insertion Chr7 618199 618202 2
Insertion Chr11 25738628 25738631 2
Insertion Chr9 4260263 4260267 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12611836 13063370
Inversion Chr9 12908487 12982070
Inversion Chr10 13129408 13160603

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6093588 Chr2 35649931

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7007678	G-A	Hetero	INTERGENIC
SBS	Chr2	8694889	G-T	Hetero	INTERGENIC
SBS	Chr2	8762523	A-T	Hetero	INTERGENIC
SBS	Chr2	9193489	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	23599803	G-T	Homo	UTR_3_PRIME
SBS	Chr2	23641488	C-T	Homo	INTRON
SBS	Chr2	28812075	G-A	Homo	INTERGENIC
SBS	Chr2	34466288	T-G	Hetero	INTERGENIC
SBS	Chr2	35651332	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g375000
SBS	Chr2	35855972	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g377500
SBS	Chr3	19492471	C-A	Hetero	INTERGENIC
SBS	Chr3	19492472	T-A	Hetero	INTERGENIC
SBS	Chr3	33613747	C-T	Homo	INTERGENIC
SBS	Chr3	37121315	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	18484183	A-T	Hetero	INTERGENIC
SBS	Chr4	20511961	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	22638383	G-A	Hetero	INTERGENIC
SBS	Chr4	33025782	T-A	Homo	INTERGENIC
SBS	Chr5	17164113	A-T	Hetero	INTERGENIC
SBS	Chr5	19642746	G-C	Hetero	INTERGENIC
SBS	Chr6	13110552	T-A	Homo	INTERGENIC
SBS	Chr6	28658605	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g263600
SBS	Chr7	9822930	C-A	Homo	INTERGENIC
SBS	Chr8	8785853	C-T	Hetero	INTERGENIC
SBS	Chr8	16391696	C-T	Homo	INTERGENIC
SBS	Chr8	18018930	C-T	Homo	INTERGENIC
SBS	Chr8	24165239	T-G	Hetero	INTRON
SBS	Chr8	24678341	G-T	Hetero	INTERGENIC
SBS	Chr8	26470296	A-C	Hetero	INTRON
SBS	Chr8	26470297	G-C	Hetero	INTRON
SBS	Chr9	9263132	C-T	Hetero	INTERGENIC
SBS	Chr9	19522128	G-C	Homo	INTERGENIC
SBS	Chr9	20624065	T-A	Hetero	INTERGENIC
SBS	Chr10	8455822	C-T	Homo	INTERGENIC
SBS	Chr11	6539858	T-C	Hetero	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	114567	114569	2
Deletion	Chr8	2242702	2242713	11
Deletion	Chr9	6261955	6261957	2
Deletion	Chr8	8555746	8555748	2
Deletion	Chr2	18887135	18887136	1	OsKitaake02g185101
Deletion	Chr1	18972272	18972281	9
Deletion	Chr7	20575326	20575328	2
Deletion	Chr6	28646253	28646256	3
Deletion	Chr3	29614295	29614297	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12611836	13063370
Inversion	Chr9	12908487	12982070
Inversion	Chr10	13129408	13160603

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes