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Mutant Information

Mutant Name	FN1351-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1351-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3285511 C-T Hetero INTERGENIC
SBS Chr1 21903153 C-T Hetero INTERGENIC
SBS Chr1 36632202 G-A Hetero INTERGENIC
SBS Chr1 38223823 C-T Hetero INTERGENIC
SBS Chr1 43104386 C-G Hetero INTERGENIC
SBS Chr2 8165613 C-T Hetero INTERGENIC
SBS Chr3 11374663 T-A Hetero INTERGENIC
SBS Chr3 15034485 C-T Hetero INTERGENIC
SBS Chr3 21853052 T-C Hetero INTERGENIC
SBS Chr3 29952156 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g313600
SBS Chr3 35185519 A-G Hetero INTERGENIC
SBS Chr4 4060422 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g019900
SBS Chr4 7136404 C-A Hetero INTERGENIC
SBS Chr4 16137519 C-A Hetero SYNONYMOUS_CODING
SBS Chr4 26143598 T-G Homo INTERGENIC
SBS Chr5 4267549 A-C Hetero INTERGENIC
SBS Chr5 8537857 T-C Hetero INTERGENIC
SBS Chr5 10641515 G-A Homo INTERGENIC
SBS Chr5 14224763 G-A Homo INTRON
SBS Chr5 25343787 G-A Hetero INTERGENIC
SBS Chr5 29699241 C-T Hetero INTERGENIC
SBS Chr6 15136596 C-T Hetero INTERGENIC
SBS Chr6 19095337 A-T Hetero INTERGENIC
SBS Chr7 1215671 C-G Hetero INTERGENIC
SBS Chr7 3857950 A-G Hetero INTERGENIC
SBS Chr7 3884172 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g049850
SBS Chr7 10064438 C-G Hetero INTRON
SBS Chr7 27256851 A-C Hetero INTERGENIC
SBS Chr9 14877512 C-T Hetero INTERGENIC
SBS Chr9 15618484 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g110400
SBS Chr11 8815733 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 13902 13903 1
Deletion Chr12 2071479 2071487 8 OsKitaake12g032900
Deletion Chr12 6650333 6650347 14
Deletion Chr8 7970499 7970506 7
Deletion Chr3 8675001 8717000 41999 5
Deletion Chr5 8976786 8976800 14
Deletion Chr6 9829092 9829103 11
Deletion Chr9 10162083 10162099 16
Deletion Chr1 13684134 13684135 1
Deletion Chr7 27447778 27447779 1 OsKitaake07g255200
Deletion Chr2 28045149 28045154 5
Deletion Chr5 28895976 28895978 2 OsKitaake05g272000
Deletion Chr1 29142029 29142030 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32618700 32618703 2
Insertion Chr6 18260956 18260959 2
Insertion Chr7 3458788 3458791 2
Insertion Chr8 29021133 29021136 2
Insertion Chr2 10324700 10324702 1
Insertion Chr2 35354679 35354681 1
Insertion Chr5 4788774 4788776 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 28078704 28641544 OsKitaake04g214400
Inversion Chr4 28078757 28641554 OsKitaake04g214400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3285511	C-T	Hetero	INTERGENIC
SBS	Chr1	21903153	C-T	Hetero	INTERGENIC
SBS	Chr1	36632202	G-A	Hetero	INTERGENIC
SBS	Chr1	38223823	C-T	Hetero	INTERGENIC
SBS	Chr1	43104386	C-G	Hetero	INTERGENIC
SBS	Chr2	8165613	C-T	Hetero	INTERGENIC
SBS	Chr3	11374663	T-A	Hetero	INTERGENIC
SBS	Chr3	15034485	C-T	Hetero	INTERGENIC
SBS	Chr3	21853052	T-C	Hetero	INTERGENIC
SBS	Chr3	29952156	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g313600
SBS	Chr3	35185519	A-G	Hetero	INTERGENIC
SBS	Chr4	4060422	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g019900
SBS	Chr4	7136404	C-A	Hetero	INTERGENIC
SBS	Chr4	16137519	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	26143598	T-G	Homo	INTERGENIC
SBS	Chr5	4267549	A-C	Hetero	INTERGENIC
SBS	Chr5	8537857	T-C	Hetero	INTERGENIC
SBS	Chr5	10641515	G-A	Homo	INTERGENIC
SBS	Chr5	14224763	G-A	Homo	INTRON
SBS	Chr5	25343787	G-A	Hetero	INTERGENIC
SBS	Chr5	29699241	C-T	Hetero	INTERGENIC
SBS	Chr6	15136596	C-T	Hetero	INTERGENIC
SBS	Chr6	19095337	A-T	Hetero	INTERGENIC
SBS	Chr7	1215671	C-G	Hetero	INTERGENIC
SBS	Chr7	3857950	A-G	Hetero	INTERGENIC
SBS	Chr7	3884172	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g049850
SBS	Chr7	10064438	C-G	Hetero	INTRON
SBS	Chr7	27256851	A-C	Hetero	INTERGENIC
SBS	Chr9	14877512	C-T	Hetero	INTERGENIC
SBS	Chr9	15618484	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g110400
SBS	Chr11	8815733	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	13902	13903	1
Deletion	Chr12	2071479	2071487	8	OsKitaake12g032900
Deletion	Chr12	6650333	6650347	14
Deletion	Chr8	7970499	7970506	7
Deletion	Chr3	8675001	8717000	41999	5
Deletion	Chr5	8976786	8976800	14
Deletion	Chr6	9829092	9829103	11
Deletion	Chr9	10162083	10162099	16
Deletion	Chr1	13684134	13684135	1
Deletion	Chr7	27447778	27447779	1	OsKitaake07g255200
Deletion	Chr2	28045149	28045154	5
Deletion	Chr5	28895976	28895978	2	OsKitaake05g272000
Deletion	Chr1	29142029	29142030	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	28078704	28641544	OsKitaake04g214400
Inversion	Chr4	28078757	28641554	OsKitaake04g214400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes