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Mutant Information

Mutant Name	FN1353-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1353-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5659305 T-A Hetero INTRON
SBS Chr1 6125677 T-A Hetero INTERGENIC
SBS Chr1 29136254 G-A Hetero INTERGENIC
SBS Chr1 29389962 A-C Hetero UTR_5_PRIME
SBS Chr1 36248503 A-T Hetero INTRON
SBS Chr1 38840210 G-A Hetero INTERGENIC
SBS Chr2 17651753 T-C Homo INTERGENIC
SBS Chr2 18615664 G-A Homo INTERGENIC
SBS Chr2 25254858 C-A Hetero UTR_3_PRIME
SBS Chr2 32339358 T-A Hetero INTERGENIC
SBS Chr3 2604167 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g036800
SBS Chr4 5532959 A-G Hetero INTERGENIC
SBS Chr4 9170854 T-A Hetero INTERGENIC
SBS Chr4 19500078 T-C Hetero INTERGENIC
SBS Chr5 2144674 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 13461954 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g104300
SBS Chr5 18463791 G-A Homo INTERGENIC
SBS Chr6 20487205 G-T Hetero INTRON
SBS Chr6 20487206 T-A Hetero INTRON
SBS Chr7 13256501 A-G Homo INTRON
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 7177821 A-T Hetero INTERGENIC
SBS Chr8 22720211 A-G Hetero INTERGENIC
SBS Chr8 27795349 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g229500
SBS Chr8 28378332 G-A Hetero INTRON
SBS Chr8 28378333 C-A Hetero INTRON
SBS Chr8 28409385 G-A Hetero INTERGENIC
SBS Chr10 3966193 A-G Homo INTERGENIC
SBS Chr10 7499609 G-C Homo INTERGENIC
SBS Chr10 7926850 C-T Hetero INTERGENIC
SBS Chr10 16641444 A-T Hetero INTERGENIC
SBS Chr12 382159 T-A Hetero INTRON
SBS Chr12 12323485 T-C Homo INTERGENIC
SBS Chr12 17136291 A-G Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr1 6298001 6317000 18999 OsKitaake01g079900
Deletion Chr7 9016014 9016015 1
Deletion Chr11 9951939 9951946 7 OsKitaake11g101500
Deletion Chr1 14339494 14339498 4
Deletion Chr5 21743243 21743257 14
Deletion Chr4 22699001 22743000 43999 7
Deletion Chr4 26621138 26621144 6
Deletion Chr2 34262656 34262657 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23794776 23794781 4
Insertion Chr8 13249516 13249518 1
Insertion Chr9 17762684 17762687 2
Insertion Chr4 9891532 9891534 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6298396 6500816
Inversion Chr12 6680042 6865060 OsKitaake12g078100
Inversion Chr2 10929497 11106319
Inversion Chr2 10929516 11106354

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17326078 Chr1 7734137

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5659305	T-A	Hetero	INTRON
SBS	Chr1	6125677	T-A	Hetero	INTERGENIC
SBS	Chr1	29136254	G-A	Hetero	INTERGENIC
SBS	Chr1	29389962	A-C	Hetero	UTR_5_PRIME
SBS	Chr1	36248503	A-T	Hetero	INTRON
SBS	Chr1	38840210	G-A	Hetero	INTERGENIC
SBS	Chr2	17651753	T-C	Homo	INTERGENIC
SBS	Chr2	18615664	G-A	Homo	INTERGENIC
SBS	Chr2	25254858	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	32339358	T-A	Hetero	INTERGENIC
SBS	Chr3	2604167	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g036800
SBS	Chr4	5532959	A-G	Hetero	INTERGENIC
SBS	Chr4	9170854	T-A	Hetero	INTERGENIC
SBS	Chr4	19500078	T-C	Hetero	INTERGENIC
SBS	Chr5	2144674	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	13461954	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g104300
SBS	Chr5	18463791	G-A	Homo	INTERGENIC
SBS	Chr6	20487205	G-T	Hetero	INTRON
SBS	Chr6	20487206	T-A	Hetero	INTRON
SBS	Chr7	13256501	A-G	Homo	INTRON
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	7177821	A-T	Hetero	INTERGENIC
SBS	Chr8	22720211	A-G	Hetero	INTERGENIC
SBS	Chr8	27795349	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g229500
SBS	Chr8	28378332	G-A	Hetero	INTRON
SBS	Chr8	28378333	C-A	Hetero	INTRON
SBS	Chr8	28409385	G-A	Hetero	INTERGENIC
SBS	Chr10	3966193	A-G	Homo	INTERGENIC
SBS	Chr10	7499609	G-C	Homo	INTERGENIC
SBS	Chr10	7926850	C-T	Hetero	INTERGENIC
SBS	Chr10	16641444	A-T	Hetero	INTERGENIC
SBS	Chr12	382159	T-A	Hetero	INTRON
SBS	Chr12	12323485	T-C	Homo	INTERGENIC
SBS	Chr12	17136291	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr1	6298001	6317000	18999	OsKitaake01g079900
Deletion	Chr7	9016014	9016015	1
Deletion	Chr11	9951939	9951946	7	OsKitaake11g101500
Deletion	Chr1	14339494	14339498	4
Deletion	Chr5	21743243	21743257	14
Deletion	Chr4	22699001	22743000	43999	7
Deletion	Chr4	26621138	26621144	6
Deletion	Chr2	34262656	34262657	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6298396	6500816
Inversion	Chr12	6680042	6865060	OsKitaake12g078100
Inversion	Chr2	10929497	11106319
Inversion	Chr2	10929516	11106354

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes